SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37440 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50040.1); Has 220 Blast hits to 205 proteins in 55 species: Archae - 0; Bacteria - 15; Metazoa - 50; Fungi - 11; Plants - 76; Viruses - 3; Other Eukaryotes - 65 (source: NCBI BLink). | chr4:17601647-17603846 FORWARD LENGTH=471 | SoyBase | E_val: 7.00E-37 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| UniRef100_G7ZX90 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial protein, putative n=1 Tax=Medicago truncatula RepID=G7ZX90_MEDTR | SoyBase | E_val: 9.00E-32 | ISS |
| UniRef100_I1N481 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N481_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g48800 not represented in the dataset |
Glyma18g48800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g253000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g48800.2 sequence type=transcript gene model=Glyma18g48800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCGAGAAGCATAGCGAAAACTCGACAACTGTCACAAAATCACAGAATATGTTCAGATTGTTAACGCTTGCTTGTGTGTTCTGTTCTGCACCACCAAATAAATAAGCTTTCAACAACAATCCCAATTTTCACTTCACAAAGGAAAGGAAAATCTTCTCTCTTCCCTGGGAAGGTTGAATGATTTGGAAAAATGAGTTCTGGCAATGTGAAGCCAGAAGAAGAAGCCCTAGAAAAGGAGAATGTAGGTGTTCCTGTCCCTGAAATTTCAGAACCAAAAGAGCAGAAGGCTGGAAGTAACTGCAAGGGAATTGAGCAGATTCCTTTGTCTGGGGAAAATGAAGAGGATGTGCTAGTTAATATAACTGGGAGTGGGTCCATAATTTCTGGTGGCAAGGCAGTGGAAGATGCTTCTGAGGATGTCACTGATGCCACGCCTTGCAGTTCCAGTTCTTTTGGTGATACAGATTCTGGCTTAGAGGATGCCTCAGGCTCGGCGTTCACCAATACGGAAGTGGAATCGCCTATGTGTGATGGTGATCAAAGTAAGACTTCTCTATGTAGGAAGAACAAGACGACAACATCACATTGGAGGAGGTTCATTCACCCTGTTAGGTGGCGCTGTAAGTGGCTAGAATTGCAAGTGAAGAAACTTAACTCTGTAGCACTGAAATATGATAAAGAGCTCGCGGCATACGATCATAGAAAGCAGCTTGCGTTTTCAAAGTTCTCAATAGATGATCTTAATGTCAAGTCAGTACCTATATATGATGGCATTCACACAAATAAAGTTATGAAGAGAAAGAAACGGAAAAAAGCTGAAGAAAGTGATTTATCATCATATGTGTCTAACCATAGTATATTCTCTTACTACGAGAACAAAAACCGTGGCGCTTGTATTGAAGATTTTCGTGGTGATGCCTTGAGAGGTAATGCAGATATTAATATTGAGGAGTTAAAGTTTAATGATAAGCTGTCTTCTGTTGATCTTGAAGATAATGATAAAGCCATCAAAGACATCATTCAGAGGATTGAAGAACTACAGTCACAAGTTGGGAAATTGAAAACTCGGATTGATAATGTGGTTAGTGAAAATCCAGGAAAGTTCTGTTCTGTAACTCAATTGAGCATGATTGGATCATCCGATGGATTTAATCATTCTCGCCATAATTCTGCTTCTTTTGTTGGAAATGACAACACATTTCCGGACAGGATAACTTCCTTTATCGAAACGACTATTAAGCCCCAGCTTGAGTTTCTCCAGGAAAATACCAAGGATGAAATTCTTATACAAAATCAGGCAGCTAAGGAAGAGTTGCATGATTTTGAGAGTGTTAGAAATCAGTTTGAGGAGAAAACCAAGAAATCAGTTGAAGAGCAGAAACCCATTTCCACTGCTCAAGTCTCAGAATCTGTCATGGACACTGAGAATGCTGTTCCTACTTTGAAAGCCGGTTCTACATCGAACTCAAATTTTCGTAGGATAACAAATAGGAGAAGGAAGAAGCCTGGCTCAAAGAGATGGAAACGAAGATAATCTGGTTAAAGCTGAATCTGGATGCAATGATTGTTGTTTCTTTTGACAACTGCAGGAGCTGATAATATGTCAATCGTAATGTGTAAATTGTAGTTATGTTGTGCATACTTTTTCTTACATCGAGAAATGAGTTCAATTGTATATGACGTGAATAAGGATAGCATGTTCACCTCTATCTTTAGAGGAAGCTTTTGTTTTTAGTTATTGGAGAATTCCTGCTTAAAGCAATGCTGTTTCTTGATTTGCTTGGGGATTATTGTGTCAGGAATTAATGAGTCTTTTCTCTCGTTGCCTAATATATTAACTACATATCCTTTGATGCTGTTTGACAGAAG
>Glyma18g48800.1 sequence type=CDS gene model=Glyma18g48800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCTGGCAATGTGAAGCCAGAAGAAGAAGCCCTAGAAAAGGAGAATGTAGGTGTTCCTGTCCCTGAAATTTCAGAACCAAAAGAGCAGAAGGCTGGAAGTAACTGCAAGGGAATTGAGCAGATTCCTTTGTCTGGGGAAAATGAAGAGGATGTGCTAGTTAATATAACTGGGAGTGGGTCCATAATTTCTGGTGGCAAGGCAGTGGAAGATGCTTCTGAGGATGTCACTGATGCCACGCCTTGCAGTTCCAGTTCTTTTGGTGATACAGATTCTGGCTTAGAGGATGCCTCAGGCTCGGCGTTCACCAATACGGAAGTGGAATCGCCTATGTGTGATGGTGATCAAAGTAAGACTTCTCTATGTAGGAAGAACAAGACGACAACATCACATTGGAGGAGGTTCATTCACCCTGTTAGGTGGCGCTGTAAGTGGCTAGAATTGCAAGTGAAGAAACTTAACTCTGTAGCACTGAAATATGATAAAGAGCTCGCGGCATACGATCATAGAAAGCAGCTTGCGTTTTCAAAGTTCTCAATAGATGATCTTAATGTCAAGTCAGTACCTATATATGATGGCATTCACACAAATAAAGTTATGAAGAGAAAGAAACGGAAAAAAGCTGAAGAAAGTGATTTATCATCATATGTGTCTAACCATAGTATATTCTCTTACTACGAGAACAAAAACCGTGGCGCTTGTATTGAAGATTTTCGTGGTGATGCCTTGAGAGGTAATGCAGATATTAATATTGAGGAGTTAAAGTTTAATGATAAGCTGTCTTCTGTTGATCTTGAAGATAATGATAAAGCCATCAAAGACATCATTCAGAGGATTGAAGAACTACAGTCACAAGTTGGGAAATTGAAAACTCGGATTGATAATGTGGTTAGTGAAAATCCAGGAAAGTTCTGTTCTGTAACTCAATTGAGCATGATTGGATCATCCGATGGATTTAATCATTCTCGCCATAATTCTGCTTCTTTTGTTGGAAATGACAACACATTTCCGGTTAGTTTTGTTCATGCTTCATCACAGCTTAAATCTGAGTTAAACACAGAAGATCTACTTTTGACTGAAAATCCATTACCATCCCAGGACAGGATAACTTCCTTTATCGAAACGACTATTAAGCCCCAGCTTGAGTTTCTCCAGGAAAATACCAAGGATGAAATTCTTATACAAAATCAGGCAGCTAAGGAAGAGTTGCATGATTTTGAGAGTGTTAGAAATCAGTTTGAGGAGAAAACCAAGAAATCAGTTGAAGAGCAGAAACCCATTTCCACTGCTCAAGTCTCAGAATCTGTCATGGACACTGAGAATGCTGTTCCTACTTTGAAAGCCGGTTCTACATCGAACTCAAATTTTCGTAGGATAACAAATAGGAGAAGGAAGAAGCCTGGCTCAAAGAGATGGAAACGAAGATAA >Glyma18g48800.2 sequence type=CDS gene model=Glyma18g48800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCTGGCAATGTGAAGCCAGAAGAAGAAGCCCTAGAAAAGGAGAATGTAGGTGTTCCTGTCCCTGAAATTTCAGAACCAAAAGAGCAGAAGGCTGGAAGTAACTGCAAGGGAATTGAGCAGATTCCTTTGTCTGGGGAAAATGAAGAGGATGTGCTAGTTAATATAACTGGGAGTGGGTCCATAATTTCTGGTGGCAAGGCAGTGGAAGATGCTTCTGAGGATGTCACTGATGCCACGCCTTGCAGTTCCAGTTCTTTTGGTGATACAGATTCTGGCTTAGAGGATGCCTCAGGCTCGGCGTTCACCAATACGGAAGTGGAATCGCCTATGTGTGATGGTGATCAAAGTAAGACTTCTCTATGTAGGAAGAACAAGACGACAACATCACATTGGAGGAGGTTCATTCACCCTGTTAGGTGGCGCTGTAAGTGGCTAGAATTGCAAGTGAAGAAACTTAACTCTGTAGCACTGAAATATGATAAAGAGCTCGCGGCATACGATCATAGAAAGCAGCTTGCGTTTTCAAAGTTCTCAATAGATGATCTTAATGTCAAGTCAGTACCTATATATGATGGCATTCACACAAATAAAGTTATGAAGAGAAAGAAACGGAAAAAAGCTGAAGAAAGTGATTTATCATCATATGTGTCTAACCATAGTATATTCTCTTACTACGAGAACAAAAACCGTGGCGCTTGTATTGAAGATTTTCGTGGTGATGCCTTGAGAGGTAATGCAGATATTAATATTGAGGAGTTAAAGTTTAATGATAAGCTGTCTTCTGTTGATCTTGAAGATAATGATAAAGCCATCAAAGACATCATTCAGAGGATTGAAGAACTACAGTCACAAGTTGGGAAATTGAAAACTCGGATTGATAATGTGGTTAGTGAAAATCCAGGAAAGTTCTGTTCTGTAACTCAATTGAGCATGATTGGATCATCCGATGGATTTAATCATTCTCGCCATAATTCTGCTTCTTTTGTTGGAAATGACAACACATTTCCGGACAGGATAACTTCCTTTATCGAAACGACTATTAAGCCCCAGCTTGAGTTTCTCCAGGAAAATACCAAGGATGAAATTCTTATACAAAATCAGGCAGCTAAGGAAGAGTTGCATGATTTTGAGAGTGTTAGAAATCAGTTTGAGGAGAAAACCAAGAAATCAGTTGAAGAGCAGAAACCCATTTCCACTGCTCAAGTCTCAGAATCTGTCATGGACACTGAGAATGCTGTTCCTACTTTGAAAGCCGGTTCTACATCGAACTCAAATTTTCGTAGGATAACAAATAGGAGAAGGAAGAAGCCTGGCTCAAAGAGATGGAAACGAAGATAA
>Glyma18g48800.1 sequence type=predicted peptide gene model=Glyma18g48800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSGNVKPEEEALEKENVGVPVPEISEPKEQKAGSNCKGIEQIPLSGENEEDVLVNITGSGSIISGGKAVEDASEDVTDATPCSSSSFGDTDSGLEDASGSAFTNTEVESPMCDGDQSKTSLCRKNKTTTSHWRRFIHPVRWRCKWLELQVKKLNSVALKYDKELAAYDHRKQLAFSKFSIDDLNVKSVPIYDGIHTNKVMKRKKRKKAEESDLSSYVSNHSIFSYYENKNRGACIEDFRGDALRGNADINIEELKFNDKLSSVDLEDNDKAIKDIIQRIEELQSQVGKLKTRIDNVVSENPGKFCSVTQLSMIGSSDGFNHSRHNSASFVGNDNTFPVSFVHASSQLKSELNTEDLLLTENPLPSQDRITSFIETTIKPQLEFLQENTKDEILIQNQAAKEELHDFESVRNQFEEKTKKSVEEQKPISTAQVSESVMDTENAVPTLKAGSTSNSNFRRITNRRRKKPGSKRWKRR* >Glyma18g48800.2 sequence type=predicted peptide gene model=Glyma18g48800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSGNVKPEEEALEKENVGVPVPEISEPKEQKAGSNCKGIEQIPLSGENEEDVLVNITGSGSIISGGKAVEDASEDVTDATPCSSSSFGDTDSGLEDASGSAFTNTEVESPMCDGDQSKTSLCRKNKTTTSHWRRFIHPVRWRCKWLELQVKKLNSVALKYDKELAAYDHRKQLAFSKFSIDDLNVKSVPIYDGIHTNKVMKRKKRKKAEESDLSSYVSNHSIFSYYENKNRGACIEDFRGDALRGNADINIEELKFNDKLSSVDLEDNDKAIKDIIQRIEELQSQVGKLKTRIDNVVSENPGKFCSVTQLSMIGSSDGFNHSRHNSASFVGNDNTFPDRITSFIETTIKPQLEFLQENTKDEILIQNQAAKEELHDFESVRNQFEEKTKKSVEEQKPISTAQVSESVMDTENAVPTLKAGSTSNSNFRRITNRRRKKPGSKRWKRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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