Glyma18g48800 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g48800

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58212420
stop:	58216144
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37440	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50040.1); Has 220 Blast hits to 205 proteins in 55 species: Archae - 0; Bacteria - 15; Metazoa - 50; Fungi - 11; Plants - 76; Viruses - 3; Other Eukaryotes - 65 (source: NCBI BLink). \| chr4:17601647-17603846 FORWARD LENGTH=471	SoyBase	E_val: 7.00E-37	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_G7ZX90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial protein, putative n=1 Tax=Medicago truncatula RepID=G7ZX90_MEDTR	SoyBase	E_val: 9.00E-32	ISS
UniRef100_I1N481	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N481_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g48800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g253000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48800

Limit To All Plant Sequences

>Glyma18g48800.2   sequence type=transcript   gene model=Glyma18g48800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGAGAAGCATAGCGAAAACTCGACAACTGTCACAAAATCACAGAATATGTTCAGATTGTTAACGCTTGCTTGTGTGTTCTGTTCTGCACCACCAAATAAATAAGCTTTCAACAACAATCCCAATTTTCACTTCACAAAGGAAAGGAAAATCTTCTCTCTTCCCTGGGAAGGTTGAATGATTTGGAAAAATGAGTTCTGGCAATGTGAAGCCAGAAGAAGAAGCCCTAGAAAAGGAGAATGTAGGTGTTCCTGTCCCTGAAATTTCAGAACCAAAAGAGCAGAAGGCTGGAAGTAACTGCAAGGGAATTGAGCAGATTCCTTTGTCTGGGGAAAATGAAGAGGATGTGCTAGTTAATATAACTGGGAGTGGGTCCATAATTTCTGGTGGCAAGGCAGTGGAAGATGCTTCTGAGGATGTCACTGATGCCACGCCTTGCAGTTCCAGTTCTTTTGGTGATACAGATTCTGGCTTAGAGGATGCCTCAGGCTCGGCGTTCACCAATACGGAAGTGGAATCGCCTATGTGTGATGGTGATCAAAGTAAGACTTCTCTATGTAGGAAGAACAAGACGACAACATCACATTGGAGGAGGTTCATTCACCCTGTTAGGTGGCGCTGTAAGTGGCTAGAATTGCAAGTGAAGAAACTTAACTCTGTAGCACTGAAATATGATAAAGAGCTCGCGGCATACGATCATAGAAAGCAGCTTGCGTTTTCAAAGTTCTCAATAGATGATCTTAATGTCAAGTCAGTACCTATATATGATGGCATTCACACAAATAAAGTTATGAAGAGAAAGAAACGGAAAAAAGCTGAAGAAAGTGATTTATCATCATATGTGTCTAACCATAGTATATTCTCTTACTACGAGAACAAAAACCGTGGCGCTTGTATTGAAGATTTTCGTGGTGATGCCTTGAGAGGTAATGCAGATATTAATATTGAGGAGTTAAAGTTTAATGATAAGCTGTCTTCTGTTGATCTTGAAGATAATGATAAAGCCATCAAAGACATCATTCAGAGGATTGAAGAACTACAGTCACAAGTTGGGAAATTGAAAACTCGGATTGATAATGTGGTTAGTGAAAATCCAGGAAAGTTCTGTTCTGTAACTCAATTGAGCATGATTGGATCATCCGATGGATTTAATCATTCTCGCCATAATTCTGCTTCTTTTGTTGGAAATGACAACACATTTCCGGACAGGATAACTTCCTTTATCGAAACGACTATTAAGCCCCAGCTTGAGTTTCTCCAGGAAAATACCAAGGATGAAATTCTTATACAAAATCAGGCAGCTAAGGAAGAGTTGCATGATTTTGAGAGTGTTAGAAATCAGTTTGAGGAGAAAACCAAGAAATCAGTTGAAGAGCAGAAACCCATTTCCACTGCTCAAGTCTCAGAATCTGTCATGGACACTGAGAATGCTGTTCCTACTTTGAAAGCCGGTTCTACATCGAACTCAAATTTTCGTAGGATAACAAATAGGAGAAGGAAGAAGCCTGGCTCAAAGAGATGGAAACGAAGATAATCTGGTTAAAGCTGAATCTGGATGCAATGATTGTTGTTTCTTTTGACAACTGCAGGAGCTGATAATATGTCAATCGTAATGTGTAAATTGTAGTTATGTTGTGCATACTTTTTCTTACATCGAGAAATGAGTTCAATTGTATATGACGTGAATAAGGATAGCATGTTCACCTCTATCTTTAGAGGAAGCTTTTGTTTTTAGTTATTGGAGAATTCCTGCTTAAAGCAATGCTGTTTCTTGATTTGCTTGGGGATTATTGTGTCAGGAATTAATGAGTCTTTTCTCTCGTTGCCTAATATATTAACTACATATCCTTTGATGCTGTTTGACAGAAG

Coding sequences of Glyma18g48800

Limit To All Plant Sequences

>Glyma18g48800.1   sequence type=CDS   gene model=Glyma18g48800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCTGGCAATGTGAAGCCAGAAGAAGAAGCCCTAGAAAAGGAGAATGTAGGTGTTCCTGTCCCTGAAATTTCAGAACCAAAAGAGCAGAAGGCTGGAAGTAACTGCAAGGGAATTGAGCAGATTCCTTTGTCTGGGGAAAATGAAGAGGATGTGCTAGTTAATATAACTGGGAGTGGGTCCATAATTTCTGGTGGCAAGGCAGTGGAAGATGCTTCTGAGGATGTCACTGATGCCACGCCTTGCAGTTCCAGTTCTTTTGGTGATACAGATTCTGGCTTAGAGGATGCCTCAGGCTCGGCGTTCACCAATACGGAAGTGGAATCGCCTATGTGTGATGGTGATCAAAGTAAGACTTCTCTATGTAGGAAGAACAAGACGACAACATCACATTGGAGGAGGTTCATTCACCCTGTTAGGTGGCGCTGTAAGTGGCTAGAATTGCAAGTGAAGAAACTTAACTCTGTAGCACTGAAATATGATAAAGAGCTCGCGGCATACGATCATAGAAAGCAGCTTGCGTTTTCAAAGTTCTCAATAGATGATCTTAATGTCAAGTCAGTACCTATATATGATGGCATTCACACAAATAAAGTTATGAAGAGAAAGAAACGGAAAAAAGCTGAAGAAAGTGATTTATCATCATATGTGTCTAACCATAGTATATTCTCTTACTACGAGAACAAAAACCGTGGCGCTTGTATTGAAGATTTTCGTGGTGATGCCTTGAGAGGTAATGCAGATATTAATATTGAGGAGTTAAAGTTTAATGATAAGCTGTCTTCTGTTGATCTTGAAGATAATGATAAAGCCATCAAAGACATCATTCAGAGGATTGAAGAACTACAGTCACAAGTTGGGAAATTGAAAACTCGGATTGATAATGTGGTTAGTGAAAATCCAGGAAAGTTCTGTTCTGTAACTCAATTGAGCATGATTGGATCATCCGATGGATTTAATCATTCTCGCCATAATTCTGCTTCTTTTGTTGGAAATGACAACACATTTCCGGTTAGTTTTGTTCATGCTTCATCACAGCTTAAATCTGAGTTAAACACAGAAGATCTACTTTTGACTGAAAATCCATTACCATCCCAGGACAGGATAACTTCCTTTATCGAAACGACTATTAAGCCCCAGCTTGAGTTTCTCCAGGAAAATACCAAGGATGAAATTCTTATACAAAATCAGGCAGCTAAGGAAGAGTTGCATGATTTTGAGAGTGTTAGAAATCAGTTTGAGGAGAAAACCAAGAAATCAGTTGAAGAGCAGAAACCCATTTCCACTGCTCAAGTCTCAGAATCTGTCATGGACACTGAGAATGCTGTTCCTACTTTGAAAGCCGGTTCTACATCGAACTCAAATTTTCGTAGGATAACAAATAGGAGAAGGAAGAAGCCTGGCTCAAAGAGATGGAAACGAAGATAA

>Glyma18g48800.2   sequence type=CDS   gene model=Glyma18g48800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCTGGCAATGTGAAGCCAGAAGAAGAAGCCCTAGAAAAGGAGAATGTAGGTGTTCCTGTCCCTGAAATTTCAGAACCAAAAGAGCAGAAGGCTGGAAGTAACTGCAAGGGAATTGAGCAGATTCCTTTGTCTGGGGAAAATGAAGAGGATGTGCTAGTTAATATAACTGGGAGTGGGTCCATAATTTCTGGTGGCAAGGCAGTGGAAGATGCTTCTGAGGATGTCACTGATGCCACGCCTTGCAGTTCCAGTTCTTTTGGTGATACAGATTCTGGCTTAGAGGATGCCTCAGGCTCGGCGTTCACCAATACGGAAGTGGAATCGCCTATGTGTGATGGTGATCAAAGTAAGACTTCTCTATGTAGGAAGAACAAGACGACAACATCACATTGGAGGAGGTTCATTCACCCTGTTAGGTGGCGCTGTAAGTGGCTAGAATTGCAAGTGAAGAAACTTAACTCTGTAGCACTGAAATATGATAAAGAGCTCGCGGCATACGATCATAGAAAGCAGCTTGCGTTTTCAAAGTTCTCAATAGATGATCTTAATGTCAAGTCAGTACCTATATATGATGGCATTCACACAAATAAAGTTATGAAGAGAAAGAAACGGAAAAAAGCTGAAGAAAGTGATTTATCATCATATGTGTCTAACCATAGTATATTCTCTTACTACGAGAACAAAAACCGTGGCGCTTGTATTGAAGATTTTCGTGGTGATGCCTTGAGAGGTAATGCAGATATTAATATTGAGGAGTTAAAGTTTAATGATAAGCTGTCTTCTGTTGATCTTGAAGATAATGATAAAGCCATCAAAGACATCATTCAGAGGATTGAAGAACTACAGTCACAAGTTGGGAAATTGAAAACTCGGATTGATAATGTGGTTAGTGAAAATCCAGGAAAGTTCTGTTCTGTAACTCAATTGAGCATGATTGGATCATCCGATGGATTTAATCATTCTCGCCATAATTCTGCTTCTTTTGTTGGAAATGACAACACATTTCCGGACAGGATAACTTCCTTTATCGAAACGACTATTAAGCCCCAGCTTGAGTTTCTCCAGGAAAATACCAAGGATGAAATTCTTATACAAAATCAGGCAGCTAAGGAAGAGTTGCATGATTTTGAGAGTGTTAGAAATCAGTTTGAGGAGAAAACCAAGAAATCAGTTGAAGAGCAGAAACCCATTTCCACTGCTCAAGTCTCAGAATCTGTCATGGACACTGAGAATGCTGTTCCTACTTTGAAAGCCGGTTCTACATCGAACTCAAATTTTCGTAGGATAACAAATAGGAGAAGGAAGAAGCCTGGCTCAAAGAGATGGAAACGAAGATAA

Predicted protein sequences of Glyma18g48800

Limit To All Plant Sequences

>Glyma18g48800.1   sequence type=predicted peptide   gene model=Glyma18g48800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSGNVKPEEEALEKENVGVPVPEISEPKEQKAGSNCKGIEQIPLSGENEEDVLVNITGSGSIISGGKAVEDASEDVTDATPCSSSSFGDTDSGLEDASGSAFTNTEVESPMCDGDQSKTSLCRKNKTTTSHWRRFIHPVRWRCKWLELQVKKLNSVALKYDKELAAYDHRKQLAFSKFSIDDLNVKSVPIYDGIHTNKVMKRKKRKKAEESDLSSYVSNHSIFSYYENKNRGACIEDFRGDALRGNADINIEELKFNDKLSSVDLEDNDKAIKDIIQRIEELQSQVGKLKTRIDNVVSENPGKFCSVTQLSMIGSSDGFNHSRHNSASFVGNDNTFPVSFVHASSQLKSELNTEDLLLTENPLPSQDRITSFIETTIKPQLEFLQENTKDEILIQNQAAKEELHDFESVRNQFEEKTKKSVEEQKPISTAQVSESVMDTENAVPTLKAGSTSNSNFRRITNRRRKKPGSKRWKRR*

>Glyma18g48800.2   sequence type=predicted peptide   gene model=Glyma18g48800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSGNVKPEEEALEKENVGVPVPEISEPKEQKAGSNCKGIEQIPLSGENEEDVLVNITGSGSIISGGKAVEDASEDVTDATPCSSSSFGDTDSGLEDASGSAFTNTEVESPMCDGDQSKTSLCRKNKTTTSHWRRFIHPVRWRCKWLELQVKKLNSVALKYDKELAAYDHRKQLAFSKFSIDDLNVKSVPIYDGIHTNKVMKRKKRKKAEESDLSSYVSNHSIFSYYENKNRGACIEDFRGDALRGNADINIEELKFNDKLSSVDLEDNDKAIKDIIQRIEELQSQVGKLKTRIDNVVSENPGKFCSVTQLSMIGSSDGFNHSRHNSASFVGNDNTFPDRITSFIETTIKPQLEFLQENTKDEILIQNQAAKEELHDFESVRNQFEEKTKKSVEEQKPISTAQVSESVMDTENAVPTLKAGSTSNSNFRRITNRRRKKPGSKRWKRR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain