Report for Sequence Feature Glyma18g48780
Feature Type: gene_model
Chromosome: Gm18
Start: 58207504
stop: 58209855
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g48780
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G44880 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:18505239-18506906 FORWARD LENGTH=555
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_A2Q2T1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=A2Q2T1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N480 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N480_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g48780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma18g48780 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g252800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g48780
Coding sequences of Glyma18g48780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g48780.1 sequence type=CDS gene model=Glyma18g48780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACAATAAACTGAGAAAACGAAGAGATGGGGTAGTTGATGAAGAGGAAGAAGGAACACTGATGGGAGAGGAGTCCCAACCACAACGAACCCTATGGAGCAACGCAGAGAGAACGTGCTTACACATTCTCCAATGCAGAACAAAGAGCATCCCCACGCTTCTCCAAATCCACGCCTTCATCCTCCGACACTCTCTCCACAGCAACCTCAACCTCCTCACCGCTTTCGTCACAACTTGTGCCTCCCTCGCCGCCTCCGCCAAGCGCCCTCTCGCAATCATTAACCACGCGCGCCGCTTCTTCAATGCCACCCACACCCGCGACACCTTCCTCTGCAACTCCATGATCGCCGCCCACTTCGCCGCTCGCCAGTTTTCGCAACCCTTCACCCTCTTCCGAGACCTTCGCCGCCAAGCACCACCTTTTACGCCCGATGGGTACACCTTCACCGCGCTCGTGAAGGGTTGCGCGACGCGTGTGGCCACTGGTGAGGGCACGCTGCTTCATGGGATGGTTTTGAAAAATGGGGTTTGCTTTGATTTGTACGTGGCTACTGCGTTGGTTGATATGTATGTGAAGTTTGGGGTTTTAGGTAGTGCGAGGAAGGTATTTGATGAAATGTCTGTGAGAAGCAAGGTTTCGTGGACTGCTGTTATCGTGGGCTATGCGAGGTGTGGGGATATGAGTGAGGCTAGGAGGCTTTTTGATGAGATGGAGGATCGGGATATTGTGGCTTTTAACGCAATGATTGATGGGTATGTGAAGATGGGGTGTGTGGGTTTGGCGAGGGAGTTGTTTAATGAGATGAGGGAGAGAAATGTGGTTTCTTGGACTAGTATGGTTTCTGGGTATTGTGGGAATGGTGATGTTGAGAATGCTAAGTTGATGTTTGATCTTATGCCGGAGAAGAATGTGTTTACTTGGAATGCCATGATTGGGGGGTATTGCCAGAATAGAAGGTCTCATGACGCGTTGGAGTTGTTTCGTGAGATGCAGACAGCATCGGTGGAGCCAAATGAGGTGACTGTTGTGTGTGTTCTTCCTGCTGTGGCTGATTTGGGTGCTTTGGATTTGGGGAGATGGATTCACAGGTTTGCCCTAAGGAAGAAGCTTGATAGGTCTGCTCGCATTGGGACTGCTTTGATCGATATGTATGCGAAATGTGGTGAAATCACAAAAGCAAAATTGGCTTTTGAGGGGATGACTGAGAGGGAAACAGCTTCGTGGAATGCTTTGATAAATGGTTTTGCAGTTAATGGCTGTGCGAAGGAAGCGTTGGAGGTGTTTGCGAGGATGATTGAGGAAGGGTTTGGACCAAATGAGGTGACTATGATTGGCGTGTTATCTGCTTGCAACCATTGTGGTCTGGTAGAGGAAGGAAGAAGATGGTTCAATGCAATGGAGAGATTTGGAATTGCGCCTCAGGTTGAGCATTATGGTTGCATGGTTGACCTTCTTGGAAGGGCTGGATGCTTGGATGAGGCTGAAAATTTGATTCAGACCATGCCTTATGATGCTAATGGGATAATATTGAGTTCTTTTCTGTTTGCTTGTGGTTACTTTAATGATGTTTTGCGGGCAGAGAGAGTGCTGAAAGAGGTGGTGAAAATGGATGAAGACGTTGCAGGAAACTATGTGATGTTGAGAAATCTGTATGCGACCAGGCAAAGGTGGACAGATGTGGAAGATGTTAAACAAATGATGAAGAAAAGAGGAACAAGTAAAGAAGTTGCTTGCAGTGTTATTGAGATTGGTGGAAGTTTTATAGAGTTTGCGGCTGGGGATTACTTGCATTCACATCTGGAGGTTATTCAGTTAACCTTGGGGCAGTTAAGTAAGCACATGAAAGTTGAAATAATCTAA
Predicted protein sequences of Glyma18g48780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g48780.1 sequence type=predicted peptide gene model=Glyma18g48780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNNKLRKRRDGVVDEEEEGTLMGEESQPQRTLWSNAERTCLHILQCRTKSIPTLLQIHAFILRHSLHSNLNLLTAFVTTCASLAASAKRPLAIINHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAMERFGIAPQVEHYGCMVDLLGRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIEIGGSFIEFAAGDYLHSHLEVIQLTLGQLSKHMKVEII*