SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37445 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17604144-17604918 REVERSE LENGTH=161 | SoyBase | E_val: 5.00E-36 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_B9SG40 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9SG40_RICCO | SoyBase | E_val: 2.00E-46 | ISS |
| UniRef100_UPI00023385EE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023385EE related cluster n=1 Tax=unknown RepID=UPI00023385EE | SoyBase | E_val: 3.00E-79 | ISS |
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Glyma18g48771 not represented in the dataset |
Glyma18g48771 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g252700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g48771.1 sequence type=CDS gene model=Glyma18g48771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCTTCATGGGAGGAAAAGGACTATCAACAACCCACTTGTTGAACTTGATAGTGAATACATTGTATAATAAATTTGTTGGGAAGGATATTAAGGAATTTGACGGATTCAAAGATGGCATTCTTGATACCTTCAACACTATCAACATGGCCTTACCCGGCAAGCATTATGTTGCACCATCATATAAGGATGTAAAGGACTTGTTCGAAAAATGGAAAGAAACCAATAAGGAAGACCAAAAGAAGATGTTCACTAAATTCATCAATGAGAATGTGAATCTCAACAAAGCAGATGAATCTATGTTAATCACTGCAATAGTGGCACCACCAGCAGCCATGATGGCTAAGAAAGCAGGACAAGTAGTGCCTCAACTTGCACTTATGAATGCCATACCTGATGTTGTGTTTGTGCCCTCTGCTACACTTTTGGCTCTCATTGCTATTAAGATCATAAAATTAACCTTCATTGGAAATACAACATCCAAGGATACAGAGTCAAATGTTCAACCTACACCTAAACAAAAACTTCCAACTACAACAGCATTTGAAAAAGAACCTCAAATTGCAACTGCACCTACAACTGAACAAGAACCTCAGCCTACAACTGCAATTGAAGCAGAACCTCAAATTGCAACTAAACAAGAACCTCAGACTACAACTACAATTGAAGAACCTCGAATTGCAACTGAACAAGAACCTCAGACTACAACAGCACCTGCTATTGAAGAAGAACCTCAAACTACAGCTTTAGCTGCAACTCCTGTTGAAGAAGAACCTCAAACTACAACCGCACCTTCATATATACCTCGACATGTCCACAAGGACAACATCATTTGCCCCTTATGTGAAGAGCTAATTGCTAAGGCTAAGAAGGAAGCAAAAAGGTCTGATGCTGTAGCATTGAAGACTTAA
>Glyma18g48771.1 sequence type=predicted peptide gene model=Glyma18g48771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSFMGGKGLSTTHLLNLIVNTLYNKFVGKDIKEFDGFKDGILDTFNTINMALPGKHYVAPSYKDVKDLFEKWKETNKEDQKKMFTKFINENVNLNKADESMLITAIVAPPAAMMAKKAGQVVPQLALMNAIPDVVFVPSATLLALIAIKIIKLTFIGNTTSKDTESNVQPTPKQKLPTTTAFEKEPQIATAPTTEQEPQPTTAIEAEPQIATKQEPQTTTTIEEPRIATEQEPQTTTAPAIEEEPQTTALAATPVEEEPQTTTAPSYIPRHVHKDNIICPLCEELIAKAKKEAKRSDAVALKT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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