Report for Sequence Feature Glyma18g48760
Feature Type: gene_model
Chromosome: Gm18
Start: 58194408
stop: 58199358
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g48760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G67325 AT
Annotation by Michelle Graham. TAIR10: Ran BP2/NZF zinc finger-like superfamily protein | chr1:25209825-25212412 REVERSE LENGTH=287
SoyBase E_val: 9.00E-43 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG4198
KOG
RNA-binding Ran Zn-finger protein and related proteins
JGI ISS
PTHR23111 Panther
ZINC FINGER PROTEIN
JGI ISS
PTHR23111:SF17 Panther
OS07G0490600 PROTEIN
JGI ISS
PF00641 PFAM
Zn-finger in Ran binding protein and others
JGI ISS
UniRef100_B6T245 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zn-finger, RanBP-type, containing protein n=1 Tax=Zea mays RepID=B6T245_MAIZE
SoyBase E_val: 2.00E-58 ISS
UniRef100_I1N478 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N478_SOYBN
SoyBase E_val: 4.00E-178 ISS
Expression Patterns of Glyma18g48760
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g48760
Paralog Evidence Comments
Glyma09g37750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g48760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g252600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g48760
Coding sequences of Glyma18g48760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g48760.1 sequence type=CDS gene model=Glyma18g48760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTACAAAGGTCAACAATCGAGGTTCGCCTGGATCAAAAAGGTTTCGAAACGACGCTTCACGTAAAGATGGAGATTGGACCTGTCCTAATTGTGGGAACTTAAACTTTTCTTTTAGAACTGTTTGCAACCAGGGACGCTGTGGTGCCCCAAGACCACCCCTAACTCCACCTGCCCCAATTATAAGCCCGTATAGAAACAGTCATCCCTTCTACTATGGTGGTGTCGGCATTCCTCCTCCATCATATGGAATGCCAAGTCAGTTTGGATCCCCAATACCTCATCCTGGCATACAGTATGATTATGGTTTGTATGCTAGGGCTCGTGCTCCTTACAGTCCATTGCCCATGTTCCCACCTGCAAGCTTTGGAGGTATTAATTATGGTCCAAGGCCTAGAATTGATGGCTATGGCTATGGCTATGGTTTTCAAAGTCCTCCTCCTCCATGGGTTGAAGGATTAATAGCTGATAATTTTGCATCTCGAAAACGCAGAGGAGGACCAGATGGTTTATTTGAAGGGGACTGGATTTGTCCGAAGTGTGACAATGTTAACTTTTCCTTTAGAACCACTTGCAACATCAAACACTGTGGAGTTGTCAAACCTAACACAAACAAACCAAATGCAGCAGTTGTTCCTGAAGGTAGTTGGACTTGTGAAAAATGCAGTAACCTCAACTATCCCTTTCGAAATGTATGCAACCGCAAAGACTGTAGAACTGAGAAAACAGTTTCTGCCTAG
Predicted protein sequences of Glyma18g48760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g48760.1 sequence type=predicted peptide gene model=Glyma18g48760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASTKVNNRGSPGSKRFRNDASRKDGDWTCPNCGNLNFSFRTVCNQGRCGAPRPPLTPPAPIISPYRNSHPFYYGGVGIPPPSYGMPSQFGSPIPHPGIQYDYGLYARARAPYSPLPMFPPASFGGINYGPRPRIDGYGYGYGFQSPPPPWVEGLIADNFASRKRRGGPDGLFEGDWICPKCDNVNFSFRTTCNIKHCGVVKPNTNKPNAAVVPEGSWTCEKCSNLNYPFRNVCNRKDCRTEKTVSA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
