Glyma18g48750 - SoyBase

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Report for Sequence Feature Glyma18g48750

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58189164
stop:	58192278
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G19890	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein \| chr4:10786948-10789053 REVERSE LENGTH=701	SoyBase	E_val: 1.00E-156	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9SQV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SQV1_RICCO	SoyBase	E_val: 1.00E-174	ISS
UniRef100_I1N476	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N476_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48750

Paralog	Evidence	Comments
Glyma09g37760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g252500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48750

Limit To All Plant Sequences

>Glyma18g48750.2   sequence type=transcript   gene model=Glyma18g48750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCACACAAATTCACCTCACTCTTCATCCTCCGCACAAAAACAATCACCCACACCACATCATCATCATCATCATGTGTGCAGTTCACGGTAACACGCGTGTGCTCACTGGTATAGGATTCTTACCACCACGATCACCATCACAACCACACAAGATTTTTCCCTCCAACGCCCCACCTCGACGTGGACCTCAATTCCCTAACCCACGACCATGTCGTCACCGTTGTCGCTTCACTCGCTTCCGATGCTGGTTCAATGGTGGCATTGGGTTGGCTCCCAGTACCAAAACGCTGAACTGGGTCGTTAAGATTGTGACTGAAATGGGTTTGGTTGAGTATGCAGAGAACCTGTTTGGTGAAATGTGTGCGAGAGGGGTGCAATCGAATTGTGTCAGCTACAGGTCATGGTTGTTGGTTATTGTAAAATGGGTGATGTTTTGGAGGCGGATAGGTGGTTGGTATTTTCGGAGGTTTTGTGAGATGGGGTTGGGGCCTAATTTGATTAACTTCACGTGTATGATTGAGGGGTTGTGCAAGAGGGGTAGCATGAAACAGGCGTTTGAGATGTTGGAGGAGATGGTTGGGAGAGGGTGGAAGCCGAATGTGTACACTCATACGGCTTTGATTGATGGTCTGTGTAAGAAAAGGTGGACCGACAAGGCGTTTAGATTGTTTCTTATGCTTGTTCGAAGCGAGAATCATAAACCAAATGTGCTTATGTATACTGCCATGATTAGTGGGTATTGCAGGGATGAGAAAATGAACCGTGCTGAAATGCTGCTGAGCCGGATGAAGGAGCAGGGATTAGTGCCAAACACGAACACATACACGACTCTCGTTGATGGGCACTGCAAAGCGGGGAATTTTGAAAGGGTGTATGAGTTGATGAATGAGGAAGGTTCCAGTCCCAATGTGGAGATTAAGCAAGCCTTGGTGTTGTTCAATAAGATGGTCAAGAGTGGTATTCAACCTGACTTTCATTCATACACTACATTGATTGCAGTGTTCTGTAGGGAAAAAAGAATGAAAGAAAGTAATTTGAGTTTCGCTTTCAAGTTTTTCCATAGGATGAGTGACCATGGTTGTGCTCCGGATTCTATTACTTATGGTGCTCTTATAAGTGGGCTGTGCAAACAGTCAAAATTGGATGAGGCTGGTCGGTTGCATGATGCCATGATAGAAAAGGGACTTACTCCATGTGAAGTTACTCAAGTAACTTTGGCTTATGAATATTGCAAGATAGATGATGGTTGCCCTGCTATGGTTGTTCTTGAAAGGCTGGAAAAGAAACCCTGGGTCTGGACAGTTAATATTAATACCCTGGTCAGGAAGCTATGTAGTGAGAGGAAAGTAGGTATGGCAGCGCCGTTCTTTCATAAGTTACTAGACATGGACCCTAATGTCAATCATGTAACAATAGCGGCATTTATGATTGGATGCTATGAAAGCTATAAGTATGCTCTTATTTCTGATTTGTCCGCAAGAATATACAAGGAAAACCATTGAGCAATCAAAGTCACTAAGTAACAAAATTAATGATGTGATTTGACGCTTTCTAAGGCTGGTTACATCTGGATCAGTAACTAGTTGGATTTTGTTATCGGATCATTGGGGTAAAAAATATACTTGCTGGAGATGGTGTGAGATTTTGGCATCTTGATACTTAATTCTGCATTCGATTACTATGTTAATGTGATCAACATTTGGGGTTATGAATGGCACAGATTCTGTAATTTATCAGGTAACCTTACATTTGCCTCTTCCCATTCAAGTTCTAGAAAGTTTGAAATCCTCGTGAATTTCATTTCAAATTTTTAATGCTTATTTGATTTAGTTTTCTGTTTTCCTTCCCTTATTTCTTGTTTTTGTATAAGTGGAACAACAGATGCAACAGCCAAGTTAAGTTTGTCCATGATTTCTTACAAGTTTCAGATTTCTTGTGTTTGTATAACTGGAACAACAGATGCAACAGCCAAGTTAAGTTTGTCCATGATTTTTTACAAGTTTCAGATTTCCTTGGATGAGCTTACCTATCACTCAGATGTGTCAAAGCATGGACATCTGTGGTTGAACAGAAGTGGCAGTTTATTAGAACTCAGTAACATGCTGTTGTTGTACCAGTGTCAAGAGTCTCAAGACAAACATACCATCTTCTGCTGGCAGGTGTACAGTGTGCAAATTTGTTAAGGAAAGTGCTAGCTGATTTGCTTATGTAAAGGAGGATATTGCTGAAATTCTTCATAGGGAGTGTGGATTTCAAACAGTATCACAATCTCTTGTAACGTCAAATGTGAAGAGTAAGTATATTATAATATATTACATCTATTTTA

Coding sequences of Glyma18g48750

Limit To All Plant Sequences

>Glyma18g48750.1   sequence type=CDS   gene model=Glyma18g48750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGCAGTTCACGGTAACACGCGTGTGCTCACTGGTATAGGATTCTTACCACCACGATCACCATCACAACCACACAAGATTTTTCCCTCCAACGCCCCACCTCGACGTGGACCTCAATTCCCTAACCCACGACCATGTCGTCACCGTTGTCGCTTCACTCGCTTCCGATGCTGGTTCAATGGTGGCATTGGGTTGGCTCCCAGTACCAAAACGCTGAACTGGGTCGTTAAGATTGTGACTGAAATGGGTTTGGTTGAGTATGCAGAGAACCTGTTTGGTGAAATCTACAGGTCATGGTTGTTGGTTATTGTAAAATGGGTGATGTTTTGGAGGCGGATAGGTGGTTGGTTTATAGTGAGGGAGTTCTGCGAGAAAGGTTTTATGGGGTTGGGGCCTAATTTGATTAACTTCACGTGTATGATTGAGGGGTTGTGCAAGAGGGGTAGCATGAAACAGGCGTTTGAGATGTTGGAGGAGATGGTTGGGAGAGGGTGGAAGCCGAATGTGTACACTCATACGGCTTTGATTGATGGTCTGTGTAAGAAAAGGTGGACCGACAAGGCGTTTAGATTGTTTCTTATGCTTGTTCGAAGCGAGAATCATAAACCAAATGTGCTTATGTATACTGCCATGATTAGTGGGTATTGCAGGGATGAGAAAATGAACCGTGCTGAAATGCTGCTGAGCCGGATGAAGGAGCAGGGATTAGTGCCAAACACGAACACATACACGACTCTCGTTGATGGGCACTGCAAAGCGGGGAATTTTGAAAGGGTGTATGAGTTGATGAATGAGGAAGGTTCCAGTCCCAATGTTTGTACCTATAATGCTATTGTCGACGGCCTTTGTAATAAGAGGCTTACAAGGTGCTTAAGAGTGGGTTTGGTGGAGATTAAGCAAGCCTTGGTGTTGTTCAATAAGATGGTCAAGAGTGGTATTCAACCTGACTTTCATTCATACACTACATTGATTGCAGTGTTCTGTAGGGAAAAAAGAATGAAAGAAAGTAATTTGAGTTTCGCTTTCAAGTTTTTCCATAGGATGAGTGACCATGGTTGTGCTCCGGATTCTATTACTTATGGTGCTCTTATAAGTGGGCTGTGCAAACAGTCAAAATTGGATGAGGCTGGTCGGTTGCATGATGCCATGATAGAAAAGGGACTTACTCCATGTGAAGTTACTCAAGTAACTTTGGCTTATGAATATTGCAAGATAGATGATGGTTGCCCTGCTATGGTTGTTCTTGAAAGGCTGGAAAAGAAACCCTGGGTCTGGACAGTTAATATTAATACCCTGGTCAGGAAGCTATGTAGTGAGAGGAAAGTAGGTATGGCAGCGCCGTTCTTTCATAAGTTACTAGACATGGACCCTAATGTCAATCATGTAACAATAGCGGCATTTATGATTGGATGCTATGAAAGCTATAAGTATGCTCTTATTTCTGATTTGTCCGCAAGAATATACAAGGAAAACCATTGA

>Glyma18g48750.2   sequence type=CDS   gene model=Glyma18g48750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGCAGTTCACGGTAACACGCGTGTGCTCACTGGTATAGGATTCTTACCACCACGATCACCATCACAACCACACAAGATTTTTCCCTCCAACGCCCCACCTCGACGTGGACCTCAATTCCCTAACCCACGACCATGTCGTCACCGTTGTCGCTTCACTCGCTTCCGATGCTGGTTCAATGGTGGCATTGGGTTGGCTCCCAGTACCAAAACGCTGAACTGGGTCGTTAAGATTGTGACTGAAATGGGTTTGGTTGAGTATGCAGAGAACCTGTTTGGTGAAATGTGTGCGAGAGGGGTGCAATCGAATTGTGTCAGCTACAGGTCATGGTTGTTGGTTATTGTAAAATGGGTGATGTTTTGGAGGCGGATAGGTGGTTGGTATTTTCGGAGGTTTTGTGAGATGGGGTTGGGGCCTAATTTGATTAACTTCACGTGTATGATTGAGGGGTTGTGCAAGAGGGGTAGCATGAAACAGGCGTTTGAGATGTTGGAGGAGATGGTTGGGAGAGGGTGGAAGCCGAATGTGTACACTCATACGGCTTTGATTGATGGTCTGTGTAAGAAAAGGTGGACCGACAAGGCGTTTAGATTGTTTCTTATGCTTGTTCGAAGCGAGAATCATAAACCAAATGTGCTTATGTATACTGCCATGATTAGTGGGTATTGCAGGGATGAGAAAATGAACCGTGCTGAAATGCTGCTGAGCCGGATGAAGGAGCAGGGATTAGTGCCAAACACGAACACATACACGACTCTCGTTGATGGGCACTGCAAAGCGGGGAATTTTGAAAGGGTGTATGAGTTGATGAATGAGGAAGGTTCCAGTCCCAATGTGGAGATTAAGCAAGCCTTGGTGTTGTTCAATAAGATGGTCAAGAGTGGTATTCAACCTGACTTTCATTCATACACTACATTGATTGCAGTGTTCTGTAGGGAAAAAAGAATGAAAGAAAGTAATTTGAGTTTCGCTTTCAAGTTTTTCCATAGGATGAGTGACCATGGTTGTGCTCCGGATTCTATTACTTATGGTGCTCTTATAAGTGGGCTGTGCAAACAGTCAAAATTGGATGAGGCTGGTCGGTTGCATGATGCCATGATAGAAAAGGGACTTACTCCATGTGAAGTTACTCAAGTAACTTTGGCTTATGAATATTGCAAGATAGATGATGGTTGCCCTGCTATGGTTGTTCTTGAAAGGCTGGAAAAGAAACCCTGGGTCTGGACAGTTAATATTAATACCCTGGTCAGGAAGCTATGTAGTGAGAGGAAAGTAGGTATGGCAGCGCCGTTCTTTCATAAGTTACTAGACATGGACCCTAATGTCAATCATGTAACAATAGCGGCATTTATGATTGGATGCTATGAAAGCTATAAGTATGCTCTTATTTCTGATTTGTCCGCAAGAATATACAAGGAAAACCATTGA

Predicted protein sequences of Glyma18g48750

Limit To All Plant Sequences

>Glyma18g48750.1   sequence type=predicted peptide   gene model=Glyma18g48750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCAVHGNTRVLTGIGFLPPRSPSQPHKIFPSNAPPRRGPQFPNPRPCRHRCRFTRFRCWFNGGIGLAPSTKTLNWVVKIVTEMGLVEYAENLFGEIYRSWLLVIVKWVMFWRRIGGWFIVREFCEKGFMGLGPNLINFTCMIEGLCKRGSMKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKRWTDKAFRLFLMLVRSENHKPNVLMYTAMISGYCRDEKMNRAEMLLSRMKEQGLVPNTNTYTTLVDGHCKAGNFERVYELMNEEGSSPNVCTYNAIVDGLCNKRLTRCLRVGLVEIKQALVLFNKMVKSGIQPDFHSYTTLIAVFCREKRMKESNLSFAFKFFHRMSDHGCAPDSITYGALISGLCKQSKLDEAGRLHDAMIEKGLTPCEVTQVTLAYEYCKIDDGCPAMVVLERLEKKPWVWTVNINTLVRKLCSERKVGMAAPFFHKLLDMDPNVNHVTIAAFMIGCYESYKYALISDLSARIYKENH*

>Glyma18g48750.2   sequence type=predicted peptide   gene model=Glyma18g48750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCAVHGNTRVLTGIGFLPPRSPSQPHKIFPSNAPPRRGPQFPNPRPCRHRCRFTRFRCWFNGGIGLAPSTKTLNWVVKIVTEMGLVEYAENLFGEMCARGVQSNCVSYRSWLLVIVKWVMFWRRIGGWYFRRFCEMGLGPNLINFTCMIEGLCKRGSMKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKRWTDKAFRLFLMLVRSENHKPNVLMYTAMISGYCRDEKMNRAEMLLSRMKEQGLVPNTNTYTTLVDGHCKAGNFERVYELMNEEGSSPNVEIKQALVLFNKMVKSGIQPDFHSYTTLIAVFCREKRMKESNLSFAFKFFHRMSDHGCAPDSITYGALISGLCKQSKLDEAGRLHDAMIEKGLTPCEVTQVTLAYEYCKIDDGCPAMVVLERLEKKPWVWTVNINTLVRKLCSERKVGMAAPFFHKLLDMDPNVNHVTIAAFMIGCYESYKYALISDLSARIYKENH*

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