Glyma18g48710 - SoyBase

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Report for Sequence Feature Glyma18g48710

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58155370
stop:	58162830
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02090	AT	Annotation by Michelle Graham. TAIR10: Proteasome component (PCI) domain protein \| chr1:387479-389568 REVERSE LENGTH=260	SoyBase	E_val: 3.00E-116	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0010387	GO-bp	Annotation by Michelle Graham. GO Biological Process: signalosome assembly	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008180	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signalosome	SoyBase	N/A	ISS
GO:0004708	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3250	KOG	COP9 signalosome, subunit CSN7	JGI		ISS
PTHR15350	Panther	COP9 COMPLEX SUBUNIT 7A	JGI		ISS
PTHR15350:SF5	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01399	PFAM	PCI domain	JGI		ISS
UniRef100_C6TNF5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TNF5_SOYBN	SoyBase	E_val: 6.00E-160	ISS
UniRef100_Q94JU3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: COP9 signalosome complex subunit 7 n=1 Tax=Arabidopsis thaliana RepID=CSN7_ARATH	SoyBase	E_val: 1.00E-113	ISS

Expression Patterns of Glyma18g48710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g48710 not represented in the dataset	Glyma18g48710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g48710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g252100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48710

Limit To All Plant Sequences

>Glyma18g48710.2   sequence type=transcript   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAAGTACTACTACGTTTGATTTAATTGTTTTGATTTCCTTGAAAGGCGAGCCATTTTTTATTTGAATATTTGCAGCATCAGTAGTGAGTAATTAGCAAAAAAAAGATTAACAGCATGGATGGGATGGTATATAAGGAGAACTATAGAGGCAAAGAAGAGAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGGAATAGTAAGAGGAAAGTTGGATCATCTGCGGCAATGCTTTCAGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGATGGATTATGAAGATTTTGGCCGACTGAAGAGGAGGCGGAAAATACTATTTTGAACATTGTAATAGATGAAGACGCCCATTGGATGGGTAATTTAGTAGCTTTAGCTTACCTGATTTTCACTTGGCATGCTGCAACTGACAATACAGCTTTTGGATCTCATCGATATTGAACTCCTGTCACACCACAATGAAAGATAAAAACAAGGGAAAAGAGGAGAAAACATGTTATTTCTTCAGGGTTGTACTTTGGAAATTGATGGTAATTGTTGAACCAATGTTAGTCATACATATTGAGTTGGCAAGAACAAGCTAAGATGGTAGTGTGTGATCTTTTCTTTTTTTGTTGGAAAATGATATGCTGTTTTTCAAATGGTAAAGTAATTTTAGCTGTTGATAAGAACAATTAATGATTAGTATTATGTGCACATGCATAATAAATCATGTACATGTTAGAATATTAATTGTTAATTTTCTAATTAACTA

>Glyma18g48710.3   sequence type=transcript   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAAGTACTACTACGTTTGATTTAATTGTTTTGATTTCCTTGAAAGGCGAGCCATTTTTTATTTGAATATTTGCAGCATCAGTAGTGAGTAATTAGCAAAAAAAAGATTAACAGCATGGATGGGATGGTATATAAGGAGAACTATAGAGGCAAAGAAGAGAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGGAGGCGGAAAATACTATTTTGAACATTGTAATAGATGAAGACGCCCATTGGATGGGTAATTTAGTAGCTTTAGCTTACCTGATTTTCACTTGGCATGCTGCAACTGACAATACAGCTTTTGGATCTCATCGATATTGAACTCCTGTCACACCACAATGAAAGATAAAAACAAGGGAAAAGAGGAGAAAACATGTTATTTCTTCAGGGTTGTACTTTGGAAATTGATGGTAATTGTTGAACCAATGTTAGTCATACATATTGAGTTGGCAAGAACAAGCTAAGATGGTAGTGTGTGATCTTTTCTTTTTTTGTTGGAAAATGATATGCTGTTTTTCAAATGGTAAAGTAATTTTAGCTGTTGATAAGAACAATTAATGATTAGTATTATGTGCACATGCATAATAAATCATGTACATGTTAGAATATTAATTGTTAATTTTCTAATTAACTA

>Glyma18g48710.4   sequence type=transcript   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAAGTACTACTACGTTTGATTTAATTGTTTTGATTTCCTTGAAAGGCGAGCCATTTTTTATTTGAATATTTGCAGCATCAGTAGTGAGTAATTAGCAAAAAAAAGATTAACAGCATGGATGGGATGGTATATAAGGAGAACTATAGAGGCAAAGAAGAGAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGAAGTTACACATTGTAAACAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGATGGATTATGAAGATTTTGGCCGACTGAAGAGGAGGCGGAAAATACTATTTTGAACATTGTAATAGATGAAGACGCCCATTGGATGGGTAATTTAGTAGCTTTAGCTTACCTGATTTTCACTTGGCATGCTGCAACTGACAATACAGCTTTTGGATCTCATCGATATTGAACTCCTGTCACACCACAATGAAAGATAAAAACAAGGGAAAAGAGGAGAAAACATGTTATTTCTTCAGGGTTGTACTTTGGAAATTGATGGTAATTGTTGAACCAATGTTAGTCATACATATTGAGTTGGCAAGAACAAGCTAAGATGGTAGTGTGTGATCTTTTCTTTTTTTGTTGGAAAATGATATGCTGTTTTTCAAATGGTAAAGTAATTTTAGCTGTTGATAAGAACAATTAATGATTAGTATTATGTGCACATGCATAATAAATCATGTACATGTTAGAATATTAATTGTTAATTTTCTAATTAACTA

Coding sequences of Glyma18g48710

Limit To All Plant Sequences

>Glyma18g48710.1   sequence type=CDS   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGATGGTATATAAGGAGAACTATAGAGGCAAAGAAGAGAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGGAATAGTAAGAGGAAAGTTGGATCATCTGCGGCAATGCTTTCAGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGAAGTTACACATTGTAAACAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGA

>Glyma18g48710.2   sequence type=CDS   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGATGGTATATAAGGAGAACTATAGAGGCAAAGAAGAGAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGGAATAGTAAGAGGAAAGTTGGATCATCTGCGGCAATGCTTTCAGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGATGGATTATGAAGATTTTGGCCGACTGAAGAGGAGGCGGAAAATACTATTTTGA

>Glyma18g48710.3   sequence type=CDS   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGATGGTATATAAGGAGAACTATAGAGGCAAAGAAGAGAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGGAGGCGGAAAATACTATTTTGAACATTGTAATAGATGAAGACGCCCATTGGATGGGTAATTTAGTAGCTTTAGCTTACCTGATTTTCACTTGGCATGCTGCAACTGACAATACAGCTTTTGGATCTCATCGATATTGA

>Glyma18g48710.4   sequence type=CDS   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGATGGTATATAAGGAGAACTATAGAGGCAAAGAAGAGAGTAGTGATGAGCGCGAAATTGAAACGCTAAAGATGGAGAAGAAGCAATCGGAGGTGATGGAGCAGTTGGTGAAGCAAGCCTCTGCTTCCCCCAACGCTAACGCACTCACTTCCATCCTCGTCCAAGCCACTTCTCACCCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAGAGTAATGCTGATTGCTTTCCTCAATTGATACCTGATCAGATCCTCAAGCTTAAGCAACTCACTGTTCTTACACTGGCTGAGACATACAAGGTACTACCCTATAACCAACTGATGCAGGAGTTAGACATGACAAATGTTCGTGAACTTGAAGATTTTCTAATTAGTGAATGCATGTACTCGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACTGGTTGTCTACATCAGAAAATCTGCTTGTTTCAATTCAAGAGAAAATAAAATGGGCTGATGCTATGAGTGAAATTGAGAAGAAGCACAGGAAGGATGTGGAAGAGAAGGTACAAGAAGTAAAGTCTCTTATCAAGAAGTTACACATTGTAAACAGGCCAACATTAACTTTGGGGGCAATGAGGATATTTGCTCTGAATCTCTTAGTGTGA

Predicted protein sequences of Glyma18g48710

Limit To All Plant Sequences

>Glyma18g48710.1   sequence type=predicted peptide   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGMVYKENYRGKEESSDEREIETLKMEKKQSEVMEQLVKQASASPNANALTSILVQATSHPNVFSFSQFLALPNLLQLEATENSTYLDMLRLFAHGTWSDYKSNADCFPQLIPDQILKLKQLTVLTLAETYKVLPYNQLMQELDMTNVRELEDFLISECMYSGIVRGKLDHLRQCFQVQFAACRDLRHAQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEIEKKHRKDVEEKVQEVKSLIKKLHIVNRPTLTLGAMRIFALNLLV*

>Glyma18g48710.2   sequence type=predicted peptide   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGMVYKENYRGKEESSDEREIETLKMEKKQSEVMEQLVKQASASPNANALTSILVQATSHPNVFSFSQFLALPNLLQLEATENSTYLDMLRLFAHGTWSDYKSNADCFPQLIPDQILKLKQLTVLTLAETYKVLPYNQLMQELDMTNVRELEDFLISECMYSGIVRGKLDHLRQCFQVQFAACRDLRHAQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEIEKKHRKDVEEKVQEVKSLIKANINFGGNEDICSESLSVMDYEDFGRLKRRRKILF*

>Glyma18g48710.3   sequence type=predicted peptide   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGMVYKENYRGKEESSDEREIETLKMEKKQSEVMEQLVKQASASPNANALTSILVQATSHPNVFSFSQFLALPNLLQLEATENSTYLDMLRLFAHGTWSDYKSNADCFPQLIPDQILKLKQLTVLTLAETYKVLPYNQLMQELDMTNVRELEDFLISECMYSVQFAACRDLRHAQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEIEKKHRKDVEEKVQEVKSLIKEAENTILNIVIDEDAHWMGNLVALAYLIFTWHAATDNTAFGSHRY*

>Glyma18g48710.4   sequence type=predicted peptide   gene model=Glyma18g48710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGMVYKENYRGKEESSDEREIETLKMEKKQSEVMEQLVKQASASPNANALTSILVQATSHPNVFSFSQFLALPNLLQLEATENSTYLDMLRLFAHGTWSDYKSNADCFPQLIPDQILKLKQLTVLTLAETYKVLPYNQLMQELDMTNVRELEDFLISECMYSVQFAACRDLRHAQLGSMIQTLSNWLSTSENLLVSIQEKIKWADAMSEIEKKHRKDVEEKVQEVKSLIKKLHIVNRPTLTLGAMRIFALNLLV*

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