Report for Sequence Feature Glyma18g48700
Feature Type: gene_model
Chromosome: Gm18
Start: 58144445
stop: 58154739
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g48700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G02100 AT
Annotation by Michelle Graham. TAIR10: Leucine carboxyl methyltransferase | chr1:389876-392448 FORWARD LENGTH=332
SoyBase E_val: 0 ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
KOG2918
KOG
Carboxymethyl transferase
JGI ISS
PTHR13600 Panther
LEUCINE CARBOXYL METHYLTRANSFERASE
JGI ISS
PF04072 PFAM
Leucine carboxyl methyltransferase
JGI ISS
UniRef100_B9RCZ7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Leucine carboxyl methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RCZ7_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233EF86 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EF86 related cluster n=1 Tax=unknown RepID=UPI000233EF86
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g48700
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g48700
Paralog Evidence Comments
Glyma09g37794 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g48700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g252000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g48700
Coding sequences of Glyma18g48700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g48700.2 sequence type=CDS gene model=Glyma18g48700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGATTCACACAGCAACACTGCAGCGGTGCAAGCCACCAACGATGACGCCTCCGCCAGCAAATTGTCATGTGTGAAAAAGGGATACATGAAAGATGATTACATTCATTTGTTCGTGAGAAGACCTGTTAGGAGATCTCCAATAATTAATCGAGGTTACTTTGCTCGCTGGGCTGCTATTCGGAAACTTCTCTATCAGTTTCTTGATGTTGAGAAGAAGTCAGATGAAGATCCCCCTATAAAGAAGCAGATATTATCACTTGGAGCAGGTTTTGACACAACATATTTTCAGTTGCAGGATGAGGGGAAAGCACCTTATTTATATGTGGAAGTGGATTTTAAGGAGGTAACTAGTAAAAAGGCAGCACTTATTGAAACTTGCAGCCCATTGAGGAATAAAGTTGACGAGACAGCAGTCATATCAAGAGAAAAAGGAGAAGTGTTCAGTGCTCACTATAAACTACTCCCTGCAGATTTGCGTGATGTGCAACAATTAAGTGCTATTATTACTCATGCTGGTTTGGATCCAAGTCTGCCAACTTTTATAATTGCAGAATGTGTTCTGATCTACTTGGATCCTGATTCAACTCGTGCAATTGTTGGTTGGGCTTCCCAAACATTTTCAACAGCAATATTTTTTCTTTATGAGCAGATCCACCCAGATGATGCTTTTGGACAACAAATGATACGGAATTTGGAGTATCGAGGTTGTGATCTGTTGGGTATTTATGCTACGCCAACTTTACTTGCAAAGGAAAAATTATTTCTGGACCAAGGATGGCAGAAGTCTGTTGCCTGGGACATGATGAGAGTTTATAATGATTTTATTGATGCCCAAGAAAGACGCAGGATTGAACGGCTGGAATTGTTTGATGAATTTGAAGAGTGGTACATGATGCAGGAGCACTACTGTGTGGCTTATGCAATCAATGATGCCATGGGTCTTTTTGGGGATTTTGGTTTTGTTAATGAAAACAGTGGGCTTCCTTCCTCATGA
Predicted protein sequences of Glyma18g48700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g48700.2 sequence type=predicted peptide gene model=Glyma18g48700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDSHSNTAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAAIRKLLYQFLDVEKKSDEDPPIKKQILSLGAGFDTTYFQLQDEGKAPYLYVEVDFKEVTSKKAALIETCSPLRNKVDETAVISREKGEVFSAHYKLLPADLRDVQQLSAIITHAGLDPSLPTFIIAECVLIYLDPDSTRAIVGWASQTFSTAIFFLYEQIHPDDAFGQQMIRNLEYRGCDLLGIYATPTLLAKEKLFLDQGWQKSVAWDMMRVYNDFIDAQERRRIERLELFDEFEEWYMMQEHYCVAYAINDAMGLFGDFGFVNENSGLPSS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
