Glyma18g48630 - SoyBase

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Report for Sequence Feature Glyma18g48630

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58042166
stop:	58043776
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44810	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr2:18479095-18480168 FORWARD LENGTH=357	SoyBase	E_val: 1.00E-172	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009901	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther dehiscence	SoyBase	N/A	ISS
GO:0010152	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen maturation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
GO:0008970	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylcholine 1-acylhydrolase activity	SoyBase	N/A	ISS
GO:0047714	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactolipase activity	SoyBase	N/A	ISS
KOG4569	KOG	Predicted lipase	JGI		ISS
PTHR21493	Panther	CGI-141-RELATED/LIPASE CONTAINING PROTEIN	JGI		ISS
PTHR21493:SF9	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01764	PFAM	Lipase (class 3)	JGI		ISS
UniRef100_G7KTG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Medicago truncatula RepID=G7KTG2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N467	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N467_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48630

Paralog	Evidence	Comments
Glyma09g37840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g251500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48630

Limit To All Plant Sequences

>Glyma18g48630.2   sequence type=CDS   gene model=Glyma18g48630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACTCTTCACAACTACACTCCAACCCTCACTAGACCACAGTGCACAACCCTCGTTCAATCCACCAAACCCCTACAAAAGATGGAGAAAATGATGAACATGCCCCAGTTGCGATCATCGTCGTTGCCGCCATTGTCCAAGAAAGTTGGGAAGAGATGGAAGGAGTACCAAGGAATGAACAATTGGGACGGTTTATTGGACCCATTGGACGAGAACCTTCGCGCTGAGATTCTTCGCTATGGCCATTTCGTTGAGGCAGCGTATAAGTCCTTTGAATTCGACCCTTCTTCCCCAAACTACGCCACATGCAAGTTCCCAAAGAACACACTCTTTGAAAAGTCTGGGTTACACAACACAGGTTACAAGGTAACAAAACACCTACGTGCAACCTCGGGGATCAAACTACCTAGCTGGGTAGACAAAGCACCAAGTTGGGTCGCAGCACAATCGAGCTACGTTGGATACGTAGCAGTGTGTAACGACAAAGAAGAGATCAAACGACTTGGTCGAAGAGACATAGTTGTGGCGTACAGAGGAACGACAACATGTTTAGAATGGCTCGAAAATCTTCGAGCCACTCTGACACATGTTTCAGTTCCGTCGATCACAACGGAGACCACAACAGAACCATGCAGCATGGAAGAAAATGGAGCGATGGTAGAAAGTGGGTTCTTGAGTTTGTACACGTCAACAGTTAGTAACAACAAATCATTTATGAGTTTGCAAGATATGGTTAGGAAAGAGATTGGTCGGATTCGTAAAACTTACCAAGGAGAGAATTTGAGTTTGACCATAACGGGGCATAGTTTGGGGGCGGCATTGGCCACTCTCACGGCGTATGACATAAAGAACAGTTTCCTCCAGCCGCCGCCGCTGGTGACCGTGATCTCCTTCGGGGGTCCACGCGTTGGGAACCGAAGCTTTCGGCGGCGGCTGGAGGAGCAAGGGACCAAGGTGTTGCGCATAGTGAACTCCGATGATGTTATAACCAAGGTGCCCGGGTTTGTGTTCGATGACGTGGACAAAACTGAGGATGTTGCGGCATGCAATGGCGGTGTCCAAGTGGCGAAGTTTCAGAGGTGGATTCGAAAACGAGCGGAAGAAGTTCAGTGGCTATTGTACTCTGAGGTTGGAAAGGAGTTACGCCTTTGTAGCAGGGATTCTCCGTACCTCAGGGGTGTCAACATTGCCACGTCTCACGATTTGAACACCTACCTGCACCTTGTTGACGGCTTTGTCAGTTCCACTTGTCCCTTTAGAGCCACTGCTAAGAGGTTCCTTCAGCATTGA

Predicted protein sequences of Glyma18g48630

Limit To All Plant Sequences

>Glyma18g48630.2   sequence type=predicted peptide   gene model=Glyma18g48630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTLHNYTPTLTRPQCTTLVQSTKPLQKMEKMMNMPQLRSSSLPPLSKKVGKRWKEYQGMNNWDGLLDPLDENLRAEILRYGHFVEAAYKSFEFDPSSPNYATCKFPKNTLFEKSGLHNTGYKVTKHLRATSGIKLPSWVDKAPSWVAAQSSYVGYVAVCNDKEEIKRLGRRDIVVAYRGTTTCLEWLENLRATLTHVSVPSITTETTTEPCSMEENGAMVESGFLSLYTSTVSNNKSFMSLQDMVRKEIGRIRKTYQGENLSLTITGHSLGAALATLTAYDIKNSFLQPPPLVTVISFGGPRVGNRSFRRRLEEQGTKVLRIVNSDDVITKVPGFVFDDVDKTEDVAACNGGVQVAKFQRWIRKRAEEVQWLLYSEVGKELRLCSRDSPYLRGVNIATSHDLNTYLHLVDGFVSSTCPFRATAKRFLQH*

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