SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17520 | AT | Annotation by Michelle Graham. TAIR10: Hyaluronan / mRNA binding family | chr4:9771496-9773313 FORWARD LENGTH=360 | SoyBase | E_val: 2.00E-90 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG2945 | KOG | Predicted RNA-binding protein | JGI | ISS | |
| PTHR12299 | Panther | HYALURONIC ACID-BINDING PROTEIN 4 | JGI | ISS | |
| PTHR12299:SF4 | Panther | NUCLEAR RNA BINDING PROTEIN A-LIKE PROTEIN | JGI | ISS | |
| PF04774 | PFAM | Hyaluronan / mRNA binding family | JGI | ISS | |
| PF09598 | PFAM | Stm1 | JGI | ISS | |
| UniRef100_I1N466 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N466_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O04237 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Vicia faba var. minor RepID=O04237_VICFA | SoyBase | E_val: 1.00E-142 | ISS |
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Glyma18g48620 not represented in the dataset |
Glyma18g48620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g37850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g251400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g48620.1 sequence type=CDS gene model=Glyma18g48620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACCACGAACCCTTTTGATTTGTTGGGTGACGACGCTGAGGACCCTTCTCAGCTCATCGCCGCCGAGCAACTCAAGGCGGCGGCTGCGGCCTCGGCGGCCACCGCGGCTCCCAAGAAGGCGCCGGCTCAGCAGAACAAGCCGGCTCAGCTCCCTACCAAGCCGCCTCCTCCGGCTCAGGCTGTGAGGGATGCCAGAAACGAGCCAGTTCGTGGAGGCCGTGGAGGTGGACGAGGTGGGGGACGTGGATTTGGACGTGGTCGTGGGTTTAGTCGTGACTCCTCGAATGATGAGAACTCATTCCCTACCAGCAGAGCTCCTTATAATCAGGGTCCTTTTGAAGAAGGAGATGCTGGGAAGTCTTCTGAAAGACGCAGTTATGGTGGACCACGAGTTCCTTACCGTGGTGGTCGTCGTGGAGGTTTCAGCAATGGTGAAACTGGTGAAGGTGAAGACGGACGACCTCGAAGAGCATTTGATCGTCGCAGTGGGACTGGACGAGGAAATGAATTCAAACGTGAAGGTTCAGGACGAGGTAACTGGGGAACCCAAACTGATGAACTTGCTCAGGTAACTGATGAGGTTGTGAATGAAACGGAAAAGAATTTGGGTGATGAGAAGCCTGCAGTTGAAGAAGATGTAGCTGATGGAAACAAGGACAGCCCTACTAATGAAACCGAAGAAAAAGAGCCTGAAGATAAGGAAATGACTCTGGAGGAATATGAAAAAGTGTTGGAAGAGAGAAGGAAGGCCTTCCAAGCACTCAAGACTGAAGAGAGAAAGGTGGACACTAAAGAGTTTGAATCCATGCAGGCCTTATCAAGCAAGAAAGATAATCATGACATATTCATTAAACTGGGATCTGATAAAGATAAGCGAAAAGAGGCTTTTGAGAAGGAAGAAAAATCCAAGAAGTCCGTGAGCATCACTGAGTTTCTGAAGCCTGCTGAGGGGGAAGCATACTATAACCCAGGGCGTGGTAGGGGTCGTGGCCGTGGTTCACGAGGTGGAGGCGGAGGCGGAGGTGTTTACCGTGGAAGTTCCACCAACAATGCACCTGCTCCATCCATTGAAGATCCTGGGCATTTCCCAAACTTGGGTGCCAAGTGA
>Glyma18g48620.1 sequence type=predicted peptide gene model=Glyma18g48620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTNPFDLLGDDAEDPSQLIAAEQLKAAAAASAATAAPKKAPAQQNKPAQLPTKPPPPAQAVRDARNEPVRGGRGGGRGGGRGFGRGRGFSRDSSNDENSFPTSRAPYNQGPFEEGDAGKSSERRSYGGPRVPYRGGRRGGFSNGETGEGEDGRPRRAFDRRSGTGRGNEFKREGSGRGNWGTQTDELAQVTDEVVNETEKNLGDEKPAVEEDVADGNKDSPTNETEEKEPEDKEMTLEEYEKVLEERRKAFQALKTEERKVDTKEFESMQALSSKKDNHDIFIKLGSDKDKRKEAFEKEEKSKKSVSITEFLKPAEGEAYYNPGRGRGRGRGSRGGGGGGGVYRGSSTNNAPAPSIEDPGHFPNLGAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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