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Report for Sequence Feature Glyma18g48610

Feature Type:gene_model
Chromosome:Gm18
Start:58017797
stop:58021504
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g48610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02130AT Annotation by Michelle Graham. TAIR10: RAS 5 | chr1:400350-401788 REVERSE LENGTH=203 SoyBaseE_val: 3.00E-142ISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0007264GO-bp Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0000139GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0032588GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network membrane SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG0084 KOG GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins JGI ISS
PTHR24073Panther FAMILY NOT NAMED JGI ISS
PTHR24073:SF227Panther SUBFAMILY NOT NAMED JGI ISS
PF00071PFAM Ras family JGI ISS
UniRef100_Q39845UniRef Annotation by Michelle Graham. Most informative UniRef hit: Small GTP-binding protein n=1 Tax=Glycine max RepID=Q39845_SOYBN SoyBaseE_val: 2.00E-146ISS
UniRef100_UPI00019A9E88UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00019A9E88 related cluster n=1 Tax=unknown RepID=UPI00019A9E88 SoyBaseE_val: 1.00E-148ISS

Expression Patterns of Glyma18g48610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48610
ParalogEvidenceComments
Glyma09g37860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g251300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g48610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g48610
>Glyma18g48610.2   sequence type=CDS   gene model=Glyma18g48610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCCGAGTATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCTGATGATTCGTACATCGAGAGCTACATAAGCACCATTGGAGTTGATTTTAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATCTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTATCGTGGGGCCCATGGGATCATTATTGTTTATGATGTGACAGATGAAGAGAGCTTCAATAATGTGAAGCAGTGGCTCAGTGAAATTGATCGCTATGCAAGTGATAATGTTAACAAGCTTTTGGTTGGAAACAAGTGTGATCTGGAAGCAAATAGAGCTGTGTCATATGAAACAGCTAAAGCATTCGCAGATGAAATAGGCATACCTTTTATGGAAACAAGTGCAAAAGATGCTACAAATGTTGAACAGGCTTTCATGGCAATGGCTGCTTCAATCAAGGATAGAATGGCAAGCCAACCTGCAAACAATGCAAGGCCTCCAACAGTGCAGATCAGGGGACAGCCAGTTGCACAGAAAGGTGGGTGCTGCTCTTCCTAA
Predicted protein sequences of Glyma18g48610
>Glyma18g48610.2   sequence type=predicted peptide   gene model=Glyma18g48610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLEANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKDRMASQPANNARPPTVQIRGQPVAQKGGCCSS*






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