Glyma18g48550 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g48550

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57954845
stop:	57956299
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23370	AT	Annotation by Michelle Graham. TAIR10: GRAM domain-containing protein / ABA-responsive protein-related \| chr5:7863542-7864201 REVERSE LENGTH=219	SoyBase	E_val: 4.00E-53	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02893	PFAM	GRAM domain	JGI		ISS
UniRef100_G7KKC8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GEM-like protein n=1 Tax=Medicago truncatula RepID=G7KKC8_MEDTR	SoyBase	E_val: 8.00E-91	ISS
UniRef100_I1L3U9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3U9_SOYBN	SoyBase	E_val: 1.00E-127	ISS

Expression Patterns of Glyma18g48550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g48550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g250300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48550

Limit To All Plant Sequences

>Glyma18g48550.2   sequence type=CDS   gene model=Glyma18g48550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTCTTCTGATACCTCTCCACAGCACGATGACTATTTACTACACAAAAGCATTTCTGTTGATGGCTATACTTACACCAACACAGATAAAGAAATTACCGCGAAGGGCACAGGAAAAAGCAGCAATTTTACACATAGGATTCATAACCATGTAAAAATGGGTCCTAATCTGTCTGAGATTCTGAAGGGTAAGTTGAGTTTGGGGGCAAGGATTATACAAGAAGGAGGAAGACGGAACATCTTCAAGAGTGTTTTTGGGATGCAAGAAAAAGAGCTATTGTTGAAGGCCTCTCAGTGTTATTTATATACCACAGCTGGTCCTATTGCTGGAATTCTCTTTGTCTCAACTGCAAAGGTTGCATTTTACAGTGAAAGGCCCATAACCTTCTCTTCTGTGACAGGAGAGTTAGTCAGGGCACCTTACAAGGTTTTGATACCAATAAGGAGAATAAAAGAAGTCAATGAAAGCCAGAATGTGAACAAGGCAGAACAGAAGTATATAGAGATAGTGACTAAGGATGATTCTGAATTTAGGTTTGTGGGGTTTTTGCGGTATGAGAAAGCTCTCAAGCATCTCAATAAAGCTATTTCCATGGCCAATAAATTCTGA

Predicted protein sequences of Glyma18g48550

Limit To All Plant Sequences

>Glyma18g48550.2   sequence type=predicted peptide   gene model=Glyma18g48550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSDTSPQHDDYLLHKSISVDGYTYTNTDKEITAKGTGKSSNFTHRIHNHVKMGPNLSEILKGKLSLGARIIQEGGRRNIFKSVFGMQEKELLLKASQCYLYTTAGPIAGILFVSTAKVAFYSERPITFSSVTGELVRAPYKVLIPIRRIKEVNESQNVNKAEQKYIEIVTKDDSEFRFVGFLRYEKALKHLNKAISMANKF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain