Glyma18g48530 - SoyBase

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Report for Sequence Feature Glyma18g48530

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57941875
stop:	57952109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G04160	AT	Annotation by Michelle Graham. TAIR10: Subtilisin-like serine endopeptidase family protein \| chr2:1401450-1407694 REVERSE LENGTH=772	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010102	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root morphogenesis	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0043086	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PTHR10795	Panther	SUBTILISIN/KEXIN-RELATED SERINE PROTEASE	JGI		ISS
PTHR10795:SF17	Panther	gb def: possible protease [sinorhizobium meliloti]	JGI		ISS
PF00082	PFAM	Subtilase family	JGI		ISS
PF02225	PFAM	PA domain	JGI		ISS
PF05922	PFAM	Peptidase inhibitor I9	JGI		ISS
UniRef100_G7KU92	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Subtilisin-like serine protease n=1 Tax=Medicago truncatula RepID=G7KU92_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EF7F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF7F related cluster n=1 Tax=unknown RepID=UPI000233EF7F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48530

Paralog	Evidence	Comments
Glyma09g37910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g250100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48530

Limit To All Plant Sequences

>Glyma18g48530.1   sequence type=CDS   gene model=Glyma18g48530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGCTCCATTTTTCGCCTTATAGTTTCGTCGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAGTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCTCTTGACCTCGAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAGTCTTGGGAAGTGAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAAACACATCAATGGCTTGGCTGCGCTACTTGAGGAGGAAGAAGCAGCAGATATTGCAAAAAACCCAAATGTGGTGTCTGTGTTCTTGAGCAAAAAACATAAACTGCACACAACTCGGTCTTGGGAATTTCTTGGACTAGACCGAAATAGTAAGAACTCTGCATGGCAAAAGGGGAGATTTGGCGAAAATACAATAATTGGTAACATCGACACAGGTGTTTGGCCTGAATCCAAGAGCTTCAGTGATAATGGATTTGGCTCCGTCCCATCAAAATGGCGAGGGGGTAACGTTTGTCAAATTAACAAACTCCCTGGCTCCAAGAGAAATCCATGCAACAGGAAGCTGATTGGAGCAAGATTCTTTAACAAAGCTTTCGAGGCATACAATGGGAAACTTGATCCATCTAGCGAAACAGCACGTGATTTTGTGGGGCATGGAACCCATACTCTATCAACCGCAGGGGGAAATTTTGTCCCAGGAGCGAGTGTATTTGCCGTTGGCAATGGCACTGCAAAGGGTGGGTCACCAAGAGCTAGGGTTGCAGCTTACAAAGTGTGTTGGTCTCCAACTGATCCTGCAAGTTGTTATGGCGCTGATGTGTTAGCTGCTATTGACCAAGCCATAGATGATGGCGTTGATATCATCAGTCTTTCTGCTGGTGGAAGCTACGTTGTGACTCCAGAAGGAATATTCACAGATGAGGTTTCCATTGGGGCATTTCATGCAATTGCTAGAAACAGAATTTTAGTTGCCTCTGCAGGGAATGATGGACCCACACCTGGAACTGTTCTCAATGTGGCTCCTTGGGTCTTCACAATTGCTGCTAGCACATTAGACAGAGACTTTAGCAGTAATTTAACCATCAACAATAGGCAAATTACGGGAGCCAGTCTTTTCGTAAATTTGCCACCCAATAAAGCCTTTTCTCTGATCCTTGCGACTGATGCTAAGCTTGCTAATGCGACATTTCGAGATGCTGAACTTTGTAGGCCTGGAACACTTGATCCTGAAAAAGTAAAACGGAAAATAGTGCGTTGTATTAGAGATGGAAAAATAAAATCCGTTGGCGAGGGTCAGGAAGCTCTATCTAAAGGCGCCGTGGCAATGCTTTTGGGCAATCAAAAGCAAAATGGGAGAACCCTTCTTGCAGAGCCTCATGTTTTGTCTACTGTGACCGACAGTAAAGGACATGCAGGGGCACAGCCTGGTTACATAACTGCCATTGGGGACGAGGACGACATCCCTATAAAAACGGGTGATACAATAAGAATGTCCCCAGCAAGAACATTATTTGGAAGAAAGCCAGCTCCAGTTATGGCTTCATTTTCATCTAGAGGACCCAATAAGATTCAACCATCAATACTCAAGCCCGATGTGACTGCGCCTGGTGTGAACATACTTGCTGCCTATTCAGAATTGGCAAGTGCATCGAACTTGCTAGTAGACACTCGTCGAGGGTTTAAATTCAATGTATTACAAGGAACTTCTATGTCTTGTCCTCATGTCGTTGGTATTGCTGGACTTATCAAAACACTTCATCCTAATTGGAGTCCTGCAGCTATTAAATCAGCAATCATGACCACAGCAACCACACGTGACAACACAAATAGGCCAATAAAGGATGCGTTTGATAATAAAGTGGCAGATGCCTTTGCATATGGTTCAGGACATGTGCAACCGGACCTTGCCATAGATCCGGGACTTGTTTATGATCTAAGCCTCGCTGATTACTTGAACTTTTTGTGTGCTTCCGGATACGACCAACAACTCATCTCCGCACTCAATTTCAATGGCACATTCATTTGTAAAGGGTCTCACAGCGTAACAGACTTGAACTACCCTTCAATCACATTACCAAATCTTGGCCTAAAACCCGTAACCATTACTCGCACAGTCACAAATGTTGGACCACCAGCCACATACACTGCAAATGTCCACTCGCCTGCTGGATATACCATTGTCGTTGTGCCAAGATCCTTGACTTTCACGAAAATTGGGGAAAAGAAGAAATTCCAAGTTATTGTGCAGGCAAGCAGTGTAACTACGCGGAGAAAGTATCAATTCGGGGATTTGCGTTGGACAGATGGAAAGCATATAGTAAGGAGTCCTATTACAGTTAAGCGCAGATGA

Predicted protein sequences of Glyma18g48530

Limit To All Plant Sequences

>Glyma18g48530.1   sequence type=predicted peptide   gene model=Glyma18g48530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSIFRLIVSSCLLFTFLLEAVHGSKKCYIVYLGAHSHGPSPTSLDLEIATHSHYDLLASVLGSEEKAKEAIIYSYNKHINGLAALLEEEEAADIAKNPNVVSVFLSKKHKLHTTRSWEFLGLDRNSKNSAWQKGRFGENTIIGNIDTGVWPESKSFSDNGFGSVPSKWRGGNVCQINKLPGSKRNPCNRKLIGARFFNKAFEAYNGKLDPSSETARDFVGHGTHTLSTAGGNFVPGASVFAVGNGTAKGGSPRARVAAYKVCWSPTDPASCYGADVLAAIDQAIDDGVDIISLSAGGSYVVTPEGIFTDEVSIGAFHAIARNRILVASAGNDGPTPGTVLNVAPWVFTIAASTLDRDFSSNLTINNRQITGASLFVNLPPNKAFSLILATDAKLANATFRDAELCRPGTLDPEKVKRKIVRCIRDGKIKSVGEGQEALSKGAVAMLLGNQKQNGRTLLAEPHVLSTVTDSKGHAGAQPGYITAIGDEDDIPIKTGDTIRMSPARTLFGRKPAPVMASFSSRGPNKIQPSILKPDVTAPGVNILAAYSELASASNLLVDTRRGFKFNVLQGTSMSCPHVVGIAGLIKTLHPNWSPAAIKSAIMTTATTRDNTNRPIKDAFDNKVADAFAYGSGHVQPDLAIDPGLVYDLSLADYLNFLCASGYDQQLISALNFNGTFICKGSHSVTDLNYPSITLPNLGLKPVTITRTVTNVGPPATYTANVHSPAGYTIVVVPRSLTFTKIGEKKKFQVIVQASSVTTRRKYQFGDLRWTDGKHIVRSPITVKRR*

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