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Report for Sequence Feature Glyma18g48505

Feature Type:gene_model
Chromosome:Gm18
Start:57917012
stop:57922689
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g48505
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G08850AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0006995GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF472Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_G7KU89UniRef Annotation by Michelle Graham. Most informative UniRef hit: Receptor protein kinase-like protein n=1 Tax=Medicago truncatula RepID=G7KU89_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233EF7EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EF7E related cluster n=1 Tax=unknown RepID=UPI000233EF7E SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g48505
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g48505 not represented in the dataset
Glyma18g48505 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g48505 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g249900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g48505
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g48505
>Glyma18g48505.1   sequence type=CDS   gene model=Glyma18g48505   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTATCCATTGAGTTTCTTGGCCGCTACTGGATTCTTTTGGTGGTGTTTCTAACACACTCTTCACCCCAACTTGCTGCAGCCGAGAACAATGAAGCAAACGCACTTTTGAGGTGGAAAGACAACTTTGACAAGCCCAGCCAAAATCTCTTGTCAACATGGACAGGCTCTGATCCATGTAAATGGCAAGGAATTCAGTGTGATAATTCCAACTCCGTCTCCACCATAAATCTTCCAAATTATGGGTTGTCAGGTACACTCCACACTCTCAACTTCTCCTCATTCCCCAACCTCCTCAGCCTAAATATCTACAACAACTCCTTTTATGGTACCATACCCCCACAAATTGGTAACATGTCCAAACTAAATGTTTTGAATTTTTCTTTAAATCTTTTCCGTGGCTCCATCCCTCAAGAAATGTGGACACTAAGGAGTTTACGCGGCCTTGATCTTTCCCAATGTAGTGAACTAAGTGGAGAGATTCCTAATTCCATAGCAAACTTGTCCAACCTGTCATATCTTGATTTAAGTGTCTGCAATTTTTCTGGCCATATTCCTCCAGAGATTGGAAAGTTGAACAAGTTGGAGAATCTACGTATTTCACGGAATAAGCTTTTCGGTTCCATTCCTCCAGAAATTGGAATGTTGACAAATCTTAAGGATATTGATTTGGCAAGGAACGTTCTCTCTGGTACTCTCCCTGAAACAATAGGTAACATGAGTAATTTGAATCTGCTTCGTCTTTCCAATAACTCTTATTTATCTGGGCCAATTCCATCCTCCATATGGAACATGACTAACTTGACATTGCTCTACCTTGATAAAAACAACCTTTCTGGATCAATCCCTGCTTCCATAGAAAATTTGGCCAATTTAGAGCAACTTACAGTTGCTAACAACCACCTTTCTGGATCCATTCCTTCCACCATTGGAAATTTGACAAAGCTCATCAAGTTGTATTTAGGCATGAACAATCTTTCTGGATCAATTCCTCCCTCCATAGGAAATTTGATCCATCTGGATGCCCTTAGTCTCCAAGTAAACAATCTCTCCGGAACAATTCCTGCCACATTTGGAAATTTGAAAATGCTCATCGTTTTGGAATTGTCCACCAACAAACTTAATGGCAGCATTCCACAAGGCTTAACTAACATTACCAACTGGTACTCCTTGTTACTACATGAGAATGACTTCACAGGCCATTTACCACCTCAAGTTTGCTCTGCTGGGGCACTAGTGTACTTTAGTGCTTTTGGCAACCGTTTCACGGGTTCCGTGCCAAAAAGCTTAAAGAATTGCTCTAGTATTCAAAGAATAAGGCTGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCGCCAAACTGGGGTAAGTGCCCTAAGCTTGAGACCTTGAAGATATCTGGTAATAATATTTCTGGTGGTATACCAATAGAACTTGTTGAGGCAACCAACCTAGGCAAGCTTCACCTTTCTTCTAACCACTTGAATGGGAAGCTTCCAAAGGAATTAGGCAATATGAAATCCTTAATTGAACTCCAGCTTAGCAACAACCATCTTTCTGGAACCATTCCAAAGAAAATTGGATCACTGCAAAAGCTTGAAGATTTGGATCTTGGAGATAACCAGTTGAGTGGAACAATTCCAATAGAAGTCGTGGAATTACCCAAGTTACGGAATTTGAATTTGAGCAATAATAAAATAAATGGAAGTGTTCCCTTTGAGTTTCGCCAACCTCTTGAATCTCTTGATCTAAGTGGGAATTTGTTGAGTGGAACAATACCAAGACAGCTTGGAGAGGTGATGGGACTGAAATTGTTGAATCTGTCTCGCAATAATCTTTCTGGAGGTATTCCATCAAGTTTTGATGACATGTCTTGTTTGATTTCTGTCAACATATCATACAACCAGTTGGAAGGGCCACTTCCAAATAATAAAGCCTTTCTTAAGGCTCCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGCAACGTCACTGGCTTGATGCTTTGCCCAACCATCAACAGCAACAAAAAAAGGCACAAGGGCATTCTACTGGCATTATGTATTATCTTGGGTGCTCTTGTTCTGGTATTATGTGGAGTGGGAGTTTCAATGTATATTCTTTTTTGGAAAGAAAGCAAGAAAGAAACCCATGCTAAAGAAAAACATCAATCAGAAAAAGCTCTGTCTGAAGAAGTGTTTTCCATATGGAGTCATGATGGCAAAATTATGTTTGAAAACATCATTGAAGCTACTGATAGCTTCAATGACAAGTATCTTATTGGAGTTGGAGGGCAAGGAAATGTTTACAAGGCTGAGTTGTCTTCAGATCAGGTTTATGCGGTGAAGAAACTTCATGTGGAAACCGATGGAGAGAGGCATAATTTTAAAGCATTTGAAAATGAAATTCAAGCCTTGACCGAAATCAGGCACCGTAACATTATAAAGCTATATGGATTTTGCTCACATTCACGGTTCTCATTTTTGGTCTACAAGTTCTTGGAAGGGGGTAGCTTGGATCAAGTACTAAGCAATGACACAAAAGCAGTTGCATTTGACTGGGAAAAGAGGGTGAATACTGTTAAAGGTGTGGCCAATGCTTTATCTTATATGCATCATGATTGCTCACCTCCAATAATTCATCGTGATATTTCTAGCAAGAATGTTCTTTTGGATTCACAATATGAAGCCCTTGTCTCTGATTTTGGGACAGCTAAGATTCTCAAGCCTGATTCTCACACTTGGACCACGTTTGCTGGCACGTTTGGGTATGCAGCTCCAGAGCTTGCCCAGACTATGGAAGTAACTGAGAAATGTGATGTATTTAGTTTTGGAGTGCTTTCTCTTGAAATCATCACGGGGAAGCATCCAGGAGATCTCATTTCTTCATTGTTTTCTTCGTCTTCATCAGCAACAATGACTTTTAATTTGCTACTAATTGATGTGTTAGACCAAAGACTACCTCAACCTCTAAAATCAGTTGTCGGGGATGTCATTTTGGTTGCAAGCTTGGCATTTTCTTGCATAAGTGAAAATCCAAGTTCTCGCCCAACCATGGATCAGGTGTCTAAAAAGCTGATGGGGAAATCACCTTTAGCAGAACAGTTCCCTGCGATTAGACTTGGACAACTCTTCTAG
Predicted protein sequences of Glyma18g48505
>Glyma18g48505.1   sequence type=predicted peptide   gene model=Glyma18g48505   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLSIEFLGRYWILLVVFLTHSSPQLAAAENNEANALLRWKDNFDKPSQNLLSTWTGSDPCKWQGIQCDNSNSVSTINLPNYGLSGTLHTLNFSSFPNLLSLNIYNNSFYGTIPPQIGNMSKLNVLNFSLNLFRGSIPQEMWTLRSLRGLDLSQCSELSGEIPNSIANLSNLSYLDLSVCNFSGHIPPEIGKLNKLENLRISRNKLFGSIPPEIGMLTNLKDIDLARNVLSGTLPETIGNMSNLNLLRLSNNSYLSGPIPSSIWNMTNLTLLYLDKNNLSGSIPASIENLANLEQLTVANNHLSGSIPSTIGNLTKLIKLYLGMNNLSGSIPPSIGNLIHLDALSLQVNNLSGTIPATFGNLKMLIVLELSTNKLNGSIPQGLTNITNWYSLLLHENDFTGHLPPQVCSAGALVYFSAFGNRFTGSVPKSLKNCSSIQRIRLEGNQLEGDIAQDFGVYPNLEYIDLSDNKFYGQISPNWGKCPKLETLKISGNNISGGIPIELVEATNLGKLHLSSNHLNGKLPKELGNMKSLIELQLSNNHLSGTIPKKIGSLQKLEDLDLGDNQLSGTIPIEVVELPKLRNLNLSNNKINGSVPFEFRQPLESLDLSGNLLSGTIPRQLGEVMGLKLLNLSRNNLSGGIPSSFDDMSCLISVNISYNQLEGPLPNNKAFLKAPIESLKNNKGLCGNVTGLMLCPTINSNKKRHKGILLALCIILGALVLVLCGVGVSMYILFWKESKKETHAKEKHQSEKALSEEVFSIWSHDGKIMFENIIEATDSFNDKYLIGVGGQGNVYKAELSSDQVYAVKKLHVETDGERHNFKAFENEIQALTEIRHRNIIKLYGFCSHSRFSFLVYKFLEGGSLDQVLSNDTKAVAFDWEKRVNTVKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQYEALVSDFGTAKILKPDSHTWTTFAGTFGYAAPELAQTMEVTEKCDVFSFGVLSLEIITGKHPGDLISSLFSSSSSATMTFNLLLIDVLDQRLPQPLKSVVGDVILVASLAFSCISENPSSRPTMDQVSKKLMGKSPLAEQFPAIRLGQLF*






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