Glyma18g48470 - SoyBase

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Report for Sequence Feature Glyma18g48470

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57873601
stop:	57879520
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44770	AT	Annotation by Michelle Graham. TAIR10: ELMO/CED-12 family protein \| chr2:18457817-18459886 FORWARD LENGTH=266	SoyBase	E_val: 5.00E-168	ISS
GO:0006909	GO-bp	Annotation by Michelle Graham. GO Biological Process: phagocytosis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005856	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2998	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12771	Panther	ENGULFMENT AND CELL MOTILITY	JGI		ISS
PTHR12771:SF3	Panther	ELMO1	JGI		ISS
PF04727	PFAM	ELMO/CED-12 family	JGI		ISS
UniRef100_B9SKK4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ELMO domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SKK4_RICCO	SoyBase	E_val: 8.00E-174	ISS
UniRef100_UPI000233E86E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E86E related cluster n=1 Tax=unknown RepID=UPI000233E86E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48470

Paralog	Evidence	Comments
Glyma09g37920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g249600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48470

Limit To All Plant Sequences

>Glyma18g48470.2   sequence type=transcript   gene model=Glyma18g48470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCGCAACCTCAAGCGCAGTCCTGTCTGCTTCCGAAACGTTGAGATGGTGAAGAAGTAAAGGAAGGATGCCTTAAACGTGCGTTTTAGAGAGAGAAAACAAAACCAAACAAACAAACAAGTCAGAATCTCTTCTCTTCTCTTTCTCTATCGTAACTCTCTTCTCTGCTCTCAGATCTTCCAAAACCCTCCTTTCCTTCATTACTAAAATCACTTCTCTTCAAAGATTCTTTTTCTCTTTCTTTCTCAGCCTCCACTTCTTTTTTCTTTCCCGCGCCCTCCAACCGCTTCTTGCTCCGTTTTTCCCTTCCCGCATTTCATCTCACTTGCATTTTCCGCTCCGTACGGAATTGTTGTCCACTCTGCAATTATTTTCCGGGAAAAACAGAGCATTCTCCCGATGACAGTAACATTTTTGTGAGGAAGTGAAGAAAAATGGACGATAGAGGCGGTTCCTTCGTCGCCGTGAGAAGAATTTCGCAGGGTCTTGATCGAAGCAACACGTGCCATTCAAGTTCCGGATCAACAGCATGGCTTGGCAGAGGTCTGTCCTGTGTCTGTGCACAGAGAAGAGAAAGCGATGCCAGACCCTCTTTTGATTTAACTCCGGCCCAGGAGGAGTGCTTGCAGAGGCTACAGAATCGCATTGATATTCCATATGATGGTTCTATCCCTGAGCACCAGGATGCCCTAAGAGCTTTATGGAGTGCTGCATTTCCTGAAGAAGAACTCCATGGTTTGATTTCTGAGCAGTGGAAGAACATGGGCTGGCAAGGGAAGGATCCATCAACAGATTTTAGGGGTGGTGGTTTCATATCATTGGAGAATTTGTTGTTTTTTGCTAGGAATTTCCCGAAATCTTTTCAAGACCTTTTACGGAAGCAGGAAGGAGATCGGTCAGTGTGGGAATATCCATTTGCTGTTGCTGGTGTTAACATCACATTCATGCTTATTCAGATGCTGGATCTTGAAGCAGTCAAACCTCGGACACTGGTGGGAGCAACTTTCCTAAAATTTCTTGCAGAAAATGATTCAGCTTTTGATCTTCTCTATTGCATAACATTCAAGATGATGGATCAACAATGGCTTTCTATGCGTGCTTCATATATGGATTTTAATACAGTAATGAAGTCTACTCGCCGTCAGCTGGAGAAAGAGCTTCTGCTTGAAGACATAATGCGGCTAGAAGATGTACCCTCATACAAACTTCTCACACGATAGTTGTTGATACTTACTCCAAGCCTACTCTACTAGTTTTAACCACAAGGTTGTACTTGATGTGATGCTACCCTTATAATTTCGATTCCTTCCAATTCGGCTTTTAACCTTCTAACAAGACTGAGGTGAGCCTAAGTATGATATCATCAAGGTTCTGGAGTCAGCAGTTGAGCTTTTAATCTAGTTGGAGGATAATATTGTGGGTGGGACAAACTGCCAGGGGAGTCTGAAATGTAGGTTTGCTTGGTACCAAAAAAGATTAGATTGTAATGAATTGTGGTTTGCCTATATATTTCCTCAATGTCCATCAATGGGCAAATATAGCTTGCAGTATTGTAATTCAGGCAGTTTGTACCCTTTTTTCTGGTCTACAGGCAGGTGTACCTAAGTAGGTAGATTCTGCCTGGGCCTTGTTTGTGGAGGAATTGATATACTGCATATTGTTGTTTGAGTAAGATTTAATGTTTGAGTTGATGAATAGTTCCTTAACTATTGCTTTTGGCTAAAAGTACCCTAGTTTTAATTTTATGCTTGCTTTTCTGGTGCTCTGAGATAAAAGATAAACTCTTGGGGCATTCATTACAATGAAATTGATCTTGGTGATTTATAAATGCCACTTCAAACTAACCAGTGAATTGGTCAG

Coding sequences of Glyma18g48470

Limit To All Plant Sequences

>Glyma18g48470.1   sequence type=CDS   gene model=Glyma18g48470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGATAGAGGCGGTTCCTTCGTCGCCGTGAGAAGAATTTCGCAGGGTCTTGATCGAAGCAACACGTGCCATTCAAGTTCCGCTGAGTTTGTGACAGGATCAACAGCATGGCTTGGCAGAGGTCTGTCCTGTGTCTGTGCACAGAGAAGAGAAAGCGATGCCAGACCCTCTTTTGATTTAACTCCGGCCCAGGAGGAGTGCTTGCAGAGGCTACAGAATCGCATTGATATTCCATATGATGGTTCTATCCCTGAGCACCAGGATGCCCTAAGAGCTTTATGGAGTGCTGCATTTCCTGAAGAAGAACTCCATGGTTTGATTTCTGAGCAGTGGAAGAACATGGGCTGGCAAGGGAAGGATCCATCAACAGATTTTAGGGGTGGTGGTTTCATATCATTGGAGAATTTGTTGTTTTTTGCTAGGAATTTCCCGAAATCTTTTCAAGACCTTTTACGGAAGCAGGAAGGAGATCGGTCAGTGTGGGAATATCCATTTGCTGTTGCTGGTGTTAACATCACATTCATGCTTATTCAGATGCTGGATCTTGAAGCAGTCAAACCTCGGACACTGGTGGGAGCAACTTTCCTAAAATTTCTTGCAGAAAATGATTCAGCTTTTGATCTTCTCTATTGCATAACATTCAAGATGATGGATCAACAATGGCTTTCTATGCGTGCTTCATATATGGATTTTAATACAGTAATGAAGTCTACTCGCCGTCAGCTGGAGAAAGAGCTTCTGCTTGAAGACATAATGCGGCTAGAAGATGTACCCTCATACAAACTTCTCACACGATAG

>Glyma18g48470.2   sequence type=CDS   gene model=Glyma18g48470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGATAGAGGCGGTTCCTTCGTCGCCGTGAGAAGAATTTCGCAGGGTCTTGATCGAAGCAACACGTGCCATTCAAGTTCCGGATCAACAGCATGGCTTGGCAGAGGTCTGTCCTGTGTCTGTGCACAGAGAAGAGAAAGCGATGCCAGACCCTCTTTTGATTTAACTCCGGCCCAGGAGGAGTGCTTGCAGAGGCTACAGAATCGCATTGATATTCCATATGATGGTTCTATCCCTGAGCACCAGGATGCCCTAAGAGCTTTATGGAGTGCTGCATTTCCTGAAGAAGAACTCCATGGTTTGATTTCTGAGCAGTGGAAGAACATGGGCTGGCAAGGGAAGGATCCATCAACAGATTTTAGGGGTGGTGGTTTCATATCATTGGAGAATTTGTTGTTTTTTGCTAGGAATTTCCCGAAATCTTTTCAAGACCTTTTACGGAAGCAGGAAGGAGATCGGTCAGTGTGGGAATATCCATTTGCTGTTGCTGGTGTTAACATCACATTCATGCTTATTCAGATGCTGGATCTTGAAGCAGTCAAACCTCGGACACTGGTGGGAGCAACTTTCCTAAAATTTCTTGCAGAAAATGATTCAGCTTTTGATCTTCTCTATTGCATAACATTCAAGATGATGGATCAACAATGGCTTTCTATGCGTGCTTCATATATGGATTTTAATACAGTAATGAAGTCTACTCGCCGTCAGCTGGAGAAAGAGCTTCTGCTTGAAGACATAATGCGGCTAGAAGATGTACCCTCATACAAACTTCTCACACGATAG

Predicted protein sequences of Glyma18g48470

Limit To All Plant Sequences

>Glyma18g48470.1   sequence type=predicted peptide   gene model=Glyma18g48470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDRGGSFVAVRRISQGLDRSNTCHSSSAEFVTGSTAWLGRGLSCVCAQRRESDARPSFDLTPAQEECLQRLQNRIDIPYDGSIPEHQDALRALWSAAFPEEELHGLISEQWKNMGWQGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNTVMKSTRRQLEKELLLEDIMRLEDVPSYKLLTR*

>Glyma18g48470.2   sequence type=predicted peptide   gene model=Glyma18g48470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDRGGSFVAVRRISQGLDRSNTCHSSSGSTAWLGRGLSCVCAQRRESDARPSFDLTPAQEECLQRLQNRIDIPYDGSIPEHQDALRALWSAAFPEEELHGLISEQWKNMGWQGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTLVGATFLKFLAENDSAFDLLYCITFKMMDQQWLSMRASYMDFNTVMKSTRRQLEKELLLEDIMRLEDVPSYKLLTR*

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