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Report for Sequence Feature Glyma18g48461

Feature Type:gene_model
Chromosome:Gm18
Start:57861080
stop:57862013
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
UniRef100_B0LUR6UniRef Annotation by Michelle Graham. Best UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUR6_SOYBN SoyBaseE_val: 1.00E-80ISS
UniRef100_B0LUR6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUR6_SOYBN SoyBaseE_val: 1.00E-80ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g48461 not represented in the dataset

Glyma18g48461 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g37930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g249500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g48461.1   sequence type=CDS   gene model=Glyma18g48461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAGAGAGAGGTGGTGCACCCAATTATGAGCTTCAAGTTTCGTTCACCAACACCCCACAAGCCTTACACGAAATGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCACCTCTCTCAATCCTTAAATAGTGATACTGGCGTTGTTGCTGTCACTGCCACGACCCCCACCGCAACCATCGGATTCATGAGTCATAGCGGACTTGTCACGAAAACTTGGAATAACGACCAGGTAGGAACTCTGGATCCAAAGCCTGTCGAAGATGAAAATTGCACTGGAAATGGTAGTGATCAAGGCAACAACAACACTTGGTATATCCCTCTTCCAACTTCAATTTCATTCCACTACTTGTAA

>Glyma18g48461.1   sequence type=predicted peptide   gene model=Glyma18g48461   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAERGGAPNYELQVSFTNTPQALHEMGFVQYEENQVLGFLSPSSQSQSSHLSQSLNSDTGVVAVTATTPTATIGFMSHSGLVTKTWNNDQVGTLDPKPVEDENCTGNGSDQGNNNTWYIPLPTSISFHYL*







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