Glyma18g48450 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g48450

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57848245
stop:	57850258
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18870	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein \| chr3:6508515-6509339 REVERSE LENGTH=274	SoyBase	E_val: 2.00E-96	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13068	Panther	CGI-12 PROTEIN-RELATED	JGI		ISS
PF02536	PFAM	mTERF	JGI		ISS
UniRef100_Q2L8W8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MTERF-like protein n=1 Tax=Brassica napus RepID=Q2L8W8_BRANA	SoyBase	E_val: 6.00E-39	ISS
UniRef100_UPI000233E86D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E86D related cluster n=1 Tax=unknown RepID=UPI000233E86D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48450

Paralog	Evidence	Comments
Glyma09g37940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g249400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48450

Limit To All Plant Sequences

>Glyma18g48450.2   sequence type=transcript   gene model=Glyma18g48450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCAGTCATAGAATTTGATTCTCTAAAGTAAGTCCAAAAAATAAAATAAAATAAAAAAGTGAAGCCAGTGAAAACAAACAAGATTATCCATATTCCTTATCATCACTTCACTGGTCTAACCTGCGACATACATTTCCCGCTAAGCCGAAACAGAAATGCTCCTCAGTTACTCTCTGCACCTCCCAATTACATCTTCTTACTCACACACCTCCAACCGCAGTCCCAACTCGAGCGGTTACATAAAGTTCCGAACAAGGTACCGCGAAAACCTGCGATACCTGCGAGCCTTAACCATAATCGACCCAAAAACCAAACCAGAGGACCTTCCTCTCCCCAACGACGTCGACCACATCATCGACACTCTCACATTCCTCAAGTCGCACTCTTTCTCCGACGCCGACATCCCTCGCCTCAAGTTCCTGACCCCTGAGCTCTTCACCACCGCCGTCGTCCCCTCCGACGTCTCCGCCGTGTTCCGCTTCCTCGCCGACGACCTCGCCGCCACGAAATCCGAGTCCCGCGACCTCATCCTCCGATGCCCCAAACTCCTCTTCTCACACGTCGACCTCTGCCTCCGACCCACGCTCCAATTTCTCCGGCAGGTTGGGGTGCAGGGGCTGAACCGGCCAACGACAAGGAACGCGCACCTGCTGAACACGCGCGTAGACAAGCTGCATGCGAAAGTTGAGTTCTTGCAAGAGTTGGGGTTTTCGTACGAGGAGGCTGTCAGGGCTTGTGCTAGGTTACCCGCAATTTTTGGGTATGACGTGGAGAACAATTTATGGCCAAAGTTTGTGTATCTTGTCAAGGAAATGGAGAGGGATTTGGAGGACTTGAAGAGGTTCCCTCAGTACTTTGGGTTCAGTTTGAAGGAGAGGATTGTGCCAAGGCACTTGCATTTGAAAAAAAGGGGTGTTAGGATTCCCTTGAATAGAATGTTGATGTGGGCTGATCAAAAGTTCTACGCCAAGTGGAAGTGATTAGTCAACTCACATATTTGCTCATAACCTTATATGATTCAACAAGATATTATCTTCTTTTTAATTGTCTAATCCAAATAGACTGTTATATTTCCATAAACTAGTTGAGTCCCAAAATATCAAGTAACCACAAGTGTTTGCAACTTTTCGGGTAAAGCAGTAATATATTT

Coding sequences of Glyma18g48450

Limit To All Plant Sequences

>Glyma18g48450.1   sequence type=CDS   gene model=Glyma18g48450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCCTCAGTTACTCTCTGCACCTCCCAATTACATCTTCTTACTCACACACCTCCAACCGCAGTCCCAACTCGAGCGGTTACATAAAGTTCCGAACAAGGTACCGCGAAAACCTGCGATACCTGCGAGCCTTAACCATAATCGACCCAAAAACCAAACCAGAGGACCTTCCTCTCCCCAACGACGTCGACCACATCATCGACACTCTCACATTCCTCAAGTCGCACTCTTTCTCCGACGCCGACATCCCTCGCCTCAAGTTCCTGACCCCTGAGCTCTTCACCACCGCCGTCGTCCCCTCCGACGTCTCCGCCGTGTTCCGCTTCCTCGCCGACGACCTCGCCGCCACGAAATCCGAGTCCCGCGACCTCATCCTCCGATGCCCCAAACTCCTCTTCTCACACGTCGACCTCTGCCTCCGACCCACGCTCCAATTTCTCCGGCAGGGGCTGAACCGGCCAACGACAAGGAACGCGCACCTGCTGAACACGCGCGTAGACAAGCTGCATGCGAAAGTTGAGTTCTTGCAAGAGTTGGGGTTTTCGTACGAGGAGGCTGTCAGGGCTTGTGCTAGGTTACCCGCAATTTTTGGGTATGACGTGGAGAACAATTTATGGCCAAAGTTTGTGTATCTTGTCAAGGAAATGGAGAGGGATTTGGAGGACTTGAAGAGGTTCCCTCAGTACTTTGGGTTCAGTTTGAAGGAGAGGATTGTGCCAAGGCACTTGCATTTGAAAAAAAGGGGTGTTAGGATTCCCTTGAATAGAATGTTGATGTGGGCTGATCAAAAGTTCTACGCCAAGTGGAAGTGA

>Glyma18g48450.2   sequence type=CDS   gene model=Glyma18g48450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCCTCAGTTACTCTCTGCACCTCCCAATTACATCTTCTTACTCACACACCTCCAACCGCAGTCCCAACTCGAGCGGTTACATAAAGTTCCGAACAAGGTACCGCGAAAACCTGCGATACCTGCGAGCCTTAACCATAATCGACCCAAAAACCAAACCAGAGGACCTTCCTCTCCCCAACGACGTCGACCACATCATCGACACTCTCACATTCCTCAAGTCGCACTCTTTCTCCGACGCCGACATCCCTCGCCTCAAGTTCCTGACCCCTGAGCTCTTCACCACCGCCGTCGTCCCCTCCGACGTCTCCGCCGTGTTCCGCTTCCTCGCCGACGACCTCGCCGCCACGAAATCCGAGTCCCGCGACCTCATCCTCCGATGCCCCAAACTCCTCTTCTCACACGTCGACCTCTGCCTCCGACCCACGCTCCAATTTCTCCGGCAGGTTGGGGTGCAGGGGCTGAACCGGCCAACGACAAGGAACGCGCACCTGCTGAACACGCGCGTAGACAAGCTGCATGCGAAAGTTGAGTTCTTGCAAGAGTTGGGGTTTTCGTACGAGGAGGCTGTCAGGGCTTGTGCTAGGTTACCCGCAATTTTTGGGTATGACGTGGAGAACAATTTATGGCCAAAGTTTGTGTATCTTGTCAAGGAAATGGAGAGGGATTTGGAGGACTTGAAGAGGTTCCCTCAGTACTTTGGGTTCAGTTTGAAGGAGAGGATTGTGCCAAGGCACTTGCATTTGAAAAAAAGGGGTGTTAGGATTCCCTTGAATAGAATGTTGATGTGGGCTGATCAAAAGTTCTACGCCAAGTGGAAGTGA

Predicted protein sequences of Glyma18g48450

Limit To All Plant Sequences

>Glyma18g48450.1   sequence type=predicted peptide   gene model=Glyma18g48450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLSYSLHLPITSSYSHTSNRSPNSSGYIKFRTRYRENLRYLRALTIIDPKTKPEDLPLPNDVDHIIDTLTFLKSHSFSDADIPRLKFLTPELFTTAVVPSDVSAVFRFLADDLAATKSESRDLILRCPKLLFSHVDLCLRPTLQFLRQGLNRPTTRNAHLLNTRVDKLHAKVEFLQELGFSYEEAVRACARLPAIFGYDVENNLWPKFVYLVKEMERDLEDLKRFPQYFGFSLKERIVPRHLHLKKRGVRIPLNRMLMWADQKFYAKWK*

>Glyma18g48450.2   sequence type=predicted peptide   gene model=Glyma18g48450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLSYSLHLPITSSYSHTSNRSPNSSGYIKFRTRYRENLRYLRALTIIDPKTKPEDLPLPNDVDHIIDTLTFLKSHSFSDADIPRLKFLTPELFTTAVVPSDVSAVFRFLADDLAATKSESRDLILRCPKLLFSHVDLCLRPTLQFLRQVGVQGLNRPTTRNAHLLNTRVDKLHAKVEFLQELGFSYEEAVRACARLPAIFGYDVENNLWPKFVYLVKEMERDLEDLKRFPQYFGFSLKERIVPRHLHLKKRGVRIPLNRMLMWADQKFYAKWK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain