Glyma18g48431 - SoyBase

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Report for Sequence Feature Glyma18g48431

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57841940
stop:	57843679
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48431

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71460	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein \| chr1:26928247-26930316 REVERSE LENGTH=689	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF142	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7JEE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JEE2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233861D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233861D related cluster n=1 Tax=unknown RepID=UPI000233861D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48431

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g48431 not represented in the dataset	Glyma18g48431 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48431

Paralog	Evidence	Comments
Glyma09g37956	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48431 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g249200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48431

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48431

Limit To All Plant Sequences

>Glyma18g48431.1   sequence type=CDS   gene model=Glyma18g48431   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACACAGAACAAAAAAGCCAAAACCCTTCACCGAAAAAACGCGTTTCCGTGCTCCTTTCCCCTCCACAACAAAAACCCAATCTTCATCTACAAAGACATCAAATCTGGACCAACGCGGCATTCCCGTCGACGCCACCACTTTCTCTTCGGTCATCGCCGCGTGCATTCGCACCAAGTCACTGCCCCAAGGAAAGGAAGTTCACACCCACATCAGAATCAATGGACTCGAAAACAACGCTTTCTTACGGACAAAGCTTGTTCACATGTACACGGCATGTGGGTCGTTGGAAGATGCACAGAAACTGTTTGATGGATTGCCCTGTGAGAGCGTGTACCCGTGGAATGCTCTGCTCAGAGGGACTGTGGTTTCGGGGAAAAGACGGTACATTGATGTGCTCAAGACTTATACTGAGATGAGGGCATTGGGGGTTGAGTTGAATGTGTATAGTTTCTCTAATGTGATTAAGAGCTTTGCCGGTGCAACAGCATTTTTGCAAGGATTGAAGACTCATGGGCTTCTGATCAAGAATGGATTGGTGGATAACTACATTCTTAGAACCAGTTTTATTGATAAGTACTTCAAGTGTGGGAAAGTTATGCTTGCGTGCCGGGTGTTTGAGGAGATTCCCGAGAGGGATATTGTTGTGTGGGGTGCGATGCTTGCTGGGTTTGCGCACAATAGGTTGCAGAGGGAGGTGTTGGAGTATGTGAGGTGGATGGTGGAGGAGGGAGTGAAGCTGAGTTCGGTTGTGATGACTATTGTTATTCCTGTGATCTGGGAGGTTTGTCTGAGGAGGTTGGGTCAGGAGTTTCATGCTTATGTTGTGAAAACGAAGTCATACTCTAAGCTGGTGCCAGTTCAGTCTGCTTTGATTGATATGTATTGCAAGTGTGGGGATATGATTTCGGCAAGACAGGTTTTTTATGGTTCGAAGGAGAGGAATGTGGTTTGTTGGACGGCTCTGATGGCAGGGTATGCTGTGAATGGGAAACTAAAGCAGGCACTGAGGTCCACGATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTGGTGACACTTGCCACTGTTCTTCCAGTTTGTGCACAGTTGAGGGCTTTGGAACAAGCGAAGCAGATTCATGCTTACGCTTTGAAACATTGGTTTCTGCCTAGTGTGTCTGTAACTTCTTCATTGATGACAATGTACTCTAAGTGTGGTGTTTTTGAGTATTCTAGAAGATTATTTGATAATATGGAACAAAGGAATGTGATTTCATGGACCGCCATGATTGATTCTTATATTGAAAATGGATATCTGTGTGAAGCACTTGGTGTGATTAGGTCAATGCAATTGTCAAAGCATAGGCCTGACTCTGTTGAACTTATTAATATGTATGGTTCATTTGGAGATATTAATAAAGCTAATTTGGTGTTTAATGCAGTTCCAGTTAAAGGTTCTATGACATGGACTGCTCTTATAAGGGCATATGGAGATCTTGAATTGTATCAAGATGCAGTTAACCTTTTTGATCAGATGAGATATTCTCCAAACCACTTCACTTTTGAAGCCATTCTATCTATATGTGACAGCTGGATTTGTTGA

Predicted protein sequences of Glyma18g48431

Limit To All Plant Sequences

>Glyma18g48431.1   sequence type=predicted peptide   gene model=Glyma18g48431   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KHRTKKPKPFTEKTRFRAPFPSTTKTQSSSTKTSNLDQRGIPVDATTFSSVIAACIRTKSLPQGKEVHTHIRINGLENNAFLRTKLVHMYTACGSLEDAQKLFDGLPCESVYPWNALLRGTVVSGKRRYIDVLKTYTEMRALGVELNVYSFSNVIKSFAGATAFLQGLKTHGLLIKNGLVDNYILRTSFIDKYFKCGKVMLACRVFEEIPERDIVVWGAMLAGFAHNRLQREVLEYVRWMVEEGVKLSSVVMTIVIPVIWEVCLRRLGQEFHAYVVKTKSYSKLVPVQSALIDMYCKCGDMISARQVFYGSKERNVVCWTALMAGYAVNGKLKQALRSTIWMQQEGFRPDVVTLATVLPVCAQLRALEQAKQIHAYALKHWFLPSVSVTSSLMTMYSKCGVFEYSRRLFDNMEQRNVISWTAMIDSYIENGYLCEALGVIRSMQLSKHRPDSVELINMYGSFGDINKANLVFNAVPVKGSMTWTALIRAYGDLELYQDAVNLFDQMRYSPNHFTFEAILSICDSWIC*

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