Glyma18g48420 - SoyBase

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Report for Sequence Feature Glyma18g48420

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57836638
stop:	57838138
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
KOG3142	KOG	Prenylated rab acceptor 1	JGI		ISS
PF03208	PFAM	PRA1 family protein	JGI		ISS
UniRef100_C6TMF0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TMF0_SOYBN	SoyBase	E_val: 2.00E-140	ISS
UniRef100_E5GCA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome p450 n=1 Tax=Cucumis melo subsp. melo RepID=E5GCA5_CUCME	SoyBase	E_val: 1.00E-08	ISS

Expression Patterns of Glyma18g48420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48420

Paralog	Evidence	Comments
Glyma09g37963	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g249100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48420

Limit To All Plant Sequences

>Glyma18g48420.1   sequence type=CDS   gene model=Glyma18g48420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATTATGGAACCACACAGAGAATTCCCACCTCCTCAACACCACAATCCACCGCTGACACTTATGAACCAGAACCAAAAGCACCCCATGAAAAGTTCTACAGTGATTTCAGAATCTACTGCCCCATTAACATACCCTCAACATCAGAAGCTGCAGGGGTACGTATCATGAGAAACATGTGCAATTTCGGATTGTACTACACACTCTTTGTGTGGATCATACTCTTCATAACCCTCATCCCTCAGCGTAAGGTGTCATTGATTCTGTTTGTCATCATGACCTATGTGACAACCCTTTATTTTTTACTCTTGAGGGCATTTCCAAACTCTGTTGTGCTTCACAGAATCATAGACAAAAGAGTTGTGCTGGCTTTGCTAGCAATTGCAACTGCAGTGCAGCTGATTTTGACTAAGGCAGGTATACATCTTGCAGTGACTTTGGCTAGCAGTGTGCCTGTGCTTTTGGTTCATGCTGTTCTGTGGGCTAGTTATGATGCCTTTGAGGTTGAGGATTCTTCTGCTAAAGGGGAACTGGCTCCTCTTGCTGGCCATAGTGAAAGTGTTGCTGACAATTCTGATGCTGTTTAA

Predicted protein sequences of Glyma18g48420

Limit To All Plant Sequences

>Glyma18g48420.1   sequence type=predicted peptide   gene model=Glyma18g48420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANYGTTQRIPTSSTPQSTADTYEPEPKAPHEKFYSDFRIYCPINIPSTSEAAGVRIMRNMCNFGLYYTLFVWIILFITLIPQRKVSLILFVIMTYVTTLYFLLLRAFPNSVVLHRIIDKRVVLALLAIATAVQLILTKAGIHLAVTLASSVPVLLVHAVLWASYDAFEVEDSSAKGELAPLAGHSESVADNSDAV*

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