Glyma18g48415 - SoyBase

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Report for Sequence Feature Glyma18g48415

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57832238
stop:	57835860
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48415

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7IUJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem I P700 chlorophyll a apoprotein n=1 Tax=Medicago truncatula RepID=G7IUJ6_MEDTR	SoyBase	E_val: 3.00E-13	ISS
UniRef100_UPI00023376A0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023376A0 related cluster n=1 Tax=unknown RepID=UPI00023376A0	SoyBase	E_val: 3.00E-18	ISS

Expression Patterns of Glyma18g48415

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g48415 not represented in the dataset	Glyma18g48415 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48415

Paralog	Evidence	Comments
Glyma09g37970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48415 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g248900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48415

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48415

Limit To All Plant Sequences

>Glyma18g48415.2   sequence type=transcript   gene model=Glyma18g48415   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGGATCCGTCCCTGCCTATACACTCTTGAAAAAAGCATAAATTGTTGGAAAAAAAGAAAAACAAATTGTAGGCGGAAGAAGCTTCCAACGCATGAAAAGGAAGAAGCATGAGCTATATGGTTCGAAGTTTCTATGTAATTTCATCACAACACTAGTTAAGACTTGGAGGATGATCATGGAAGTTGGAAGCCAAATATTTTAAATTGGCATCTTGTAGAATTGGCGATCCTCTTGTGTCATGGATCCTTTGAGTCTTTCTTCTGTTTCAGAACAGGCCAGGGAGAACAATGTAAACAATAAGTTCTTGCTTCCAAGAAAGCCTGCAAGGCAACCAAATCCAATCATATACAGGAAATTGCGTCGAGGGTCAGCTGCAGGGAGATTTCCAGAGAAACAAATTGAGTACCCTACAAATAAGGAGTTACTGAGAACAATTGTGTACTTGAGAAATGCTACAGCAGTATATTATGAGCCTGACAAAATATTGCCTTACAATAAAGCCTATATTGATGAGGAAGATGAAGAAGAGTGGAGCACACAAAGCGACGAGGAAAAAGGTCAGAAGGAACTTAAAAAAACTATCAACAACTCTAACGACATACTCACCAAGAAACGGAAAAAGAAAAGCAGCCACATTGACAAGGCAAACAAGGAACCTTCTATATCTTCTTCCTCTTCCCATGTGATAAACATCAAAGAAATGAGAAAAACTTTAGAACGCAGAGGCCAAGGATTAACAAAAAATGATTCTGTAAGTGTTTCCATTCGTGAGACATTCATACAGTTCTGTTCAACAAAGATAATTTGTCCACAGGAACATCGTGCTGCATTAGCAGTTAAGTTATATGGAGTTCAAGCAGCACTTTTATCTGCTTTAGGCAACCCTTTTGAGAACCTATCCCAATCCATAAGCTCAAGAAACAGCTCACAGATACTAAGTTTGTCGAAAGCCTCTACCGGGTTCTTGCCAGCAATTTTATGGACTGGAATGTTCATACATCAGGGTTTGATGTCATGTGTGGCACGTTTAGAATGAGTGGCATCTTGTTTGCATCTTTAGGGGTTCTTGGCTTTGTTATGCTGCTTCTTGTTGTGGTCTTGCTGGTGCTTTTTGCTTCCTGGAGATGCCCAAAACAAGATGGAGGAGCCAAGTGATGAATGCTTAGTGCTTTGGCATATAGGGTAACTATCAATAATAATAATTAGTTTTCAATTCCTTTAATTATTTAGCCGTGTAAATATGTTATTTTCAATTATGATTTGTTGACAATTATTAGGAGATTGGTAGCTTGATTCACTACATATTAGGGCTGTTCACTTGTATATATCACTGTAAACTAATATCAAATTATGAATAAAAGTTACAAACCTATTCCTCTATATGGTATCAGCCTAAACGATCCACTCATTCCCTATTTCTTCAATTAAGGACGTCGTTTTCCACCCTTGCCTCCCATGGCCGACAACAACTCCTTCATTCCCAACCCCCATGAGCCATCCAAACCCCTTGCTTGCATCACTTTCACCAATGTCACCAAACTTCTTCCCAATAATTATCCTAATTGGAAACAACAAGTTGAAGCTCTCCTTGATGGCTATGATCTCCTCCAATATCCAGATGGATCTTTTCCTTCGCCGTCAGAAACGATCCTCACCGCTCTAACATCTTCGACGCCACTCCGTCGGAAACGATCCCACCACTGCATCACTTCCGGTAACAACTCAGAATCCTGCTTACCAAACCTGGCGTCGACAGGACCGCCTTATATATGGTGCTCTCCTCACCACTCTCTCTAATGAAGTGGCCTCCCTGATGTCTCAAATCAAGACCTCGCATGATCTCTGGATCCTTCTCAAAATCACCTATGCCAAAGCATCTCGCAGCCATCTCAAGCAGTTAACGGAACGTCTCCGTACGGCTTCCAAAGGTACATTCGCCTTTGTTTGCACATTTGTAGATTTAAAAACTTTTGTATGTTTCATCTAAAGTCTAAACTGTGATAATTTTTTCCTATAGTATATGCTACACGTGGATTTGAAAAGCTTTTGTCAACTACGTACCCAGTACCCTCCCCCAAAAGCCCCCATCCAATTAGGGAGCCTTATTTAAAGCAATTTTGATTTTGTTTTTCACACATCATCTTTTTTACATTTATAAAATAACCCGTACAATTTAGTCTAAACATGCATCATTCAAATTTAATAAAATCACTTGACATTTCTAACAGAAATGCAACTGAAAAGTTTGTCAATATAAAACGTAATTAAAAAAATCGTCATCACAAAACTCTTATCAACTGAAAAATAATTTTATTCATATACCACCTGGCGAAAAACATACTCAAGATAGGTATTACAGCAAACTAGATGGAGGAATAATTCAACTTTTGAAGTAGACGTTTTAGGGG

Coding sequences of Glyma18g48415

Limit To All Plant Sequences

>Glyma18g48415.1   sequence type=CDS   gene model=Glyma18g48415   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTTTGAGTCTTTCTTCTGTTTCAGAACAGGCCAGGGAGAACAATGTAAACAATAAGTTCTTGCTTCCAAGAAAGCCTGCAAGGCAACCAAATCCAATCATATACAGGAAATTGCGTCGAGGGTCAGCTGCAGGGAGATTTCCAGAGAAACAAATTGAGTACCCTACAAATAAGGAGTTACTGAGAACAATTGTGTACTTGAGAAATGCTACAGCAGTATATTATGAGCCTGACAAAATATTGCCTTACAATAAAGCCTATATTGATGAGGAAGATGAAGAAGAGTGGAGCACACAAAGCGACGAGGAAAAAGGTCAGAAGGAACTTAAAAAAACTATCAACAACTCTAACGACATACTCACCAAGAAACGGAAAAAGAAAAGCAGCCACATTGACAAGGCAAACAAGGAACCTTCTATATCTTCTTCCTCTTCCCATGTGATAAACATCAAAGAAATGAGAAAAACTTTAGAACGCAGAGGCCAAGGATTAACAAAAAATGATTCTGTAAGTGTTTCCATTCGTGAGACATTCATACAGTTCTGTTCAACAAAGATAATTTGTCCACAGGAACATCGTGCTGCATTAGCAGTTAAGTTATATGGAGTTCAAGCAGCACTTTTATCTGCTTTAGGCAACCCTTTTGAGAACCTATCCCAATCCATAAGCTCAAGAAACAGCTCACAGATACTAAGTTTGTCGAAAGCCTCTACCGGGTTCTTGCCAGCAATTTTATGGACTGGAATGTTCATAGTGAGTTTTGTGTACACATTAATTGTGGTTTGGTCTTTGGCTTTTAGAGTGCCTATCATCTCAATGCTGTGCCTTTCTCTTCTGTACTGTTTATCTGTGTTGGTTGCTGCAGCATCAGGGTTTGATGTCATGTGTGGCACGTTTAGAATGAGTGGCATCTTGTTTGCATCTTTAGGGGTTCTTGGCTTTGTTATGCTGCTTCTTGTTGTGGTCTTGCTGGTGCTTTTTGCTTCCTGGAGATGCCCAAAACAAGATGGAGGAGCCAAGTGA

>Glyma18g48415.2   sequence type=CDS   gene model=Glyma18g48415   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTTTGAGTCTTTCTTCTGTTTCAGAACAGGCCAGGGAGAACAATGTAAACAATAAGTTCTTGCTTCCAAGAAAGCCTGCAAGGCAACCAAATCCAATCATATACAGGAAATTGCGTCGAGGGTCAGCTGCAGGGAGATTTCCAGAGAAACAAATTGAGTACCCTACAAATAAGGAGTTACTGAGAACAATTGTGTACTTGAGAAATGCTACAGCAGTATATTATGAGCCTGACAAAATATTGCCTTACAATAAAGCCTATATTGATGAGGAAGATGAAGAAGAGTGGAGCACACAAAGCGACGAGGAAAAAGGTCAGAAGGAACTTAAAAAAACTATCAACAACTCTAACGACATACTCACCAAGAAACGGAAAAAGAAAAGCAGCCACATTGACAAGGCAAACAAGGAACCTTCTATATCTTCTTCCTCTTCCCATGTGATAAACATCAAAGAAATGAGAAAAACTTTAGAACGCAGAGGCCAAGGATTAACAAAAAATGATTCTGTAAGTGTTTCCATTCGTGAGACATTCATACAGTTCTGTTCAACAAAGATAATTTGTCCACAGGAACATCGTGCTGCATTAGCAGTTAAGTTATATGGAGTTCAAGCAGCACTTTTATCTGCTTTAGGCAACCCTTTTGAGAACCTATCCCAATCCATAAGCTCAAGAAACAGCTCACAGATACTAAGTTTGTCGAAAGCCTCTACCGGGTTCTTGCCAGCAATTTTATGGACTGGAATGTTCATACATCAGGGTTTGATGTCATGTGTGGCACGTTTAGAATGA

Predicted protein sequences of Glyma18g48415

Limit To All Plant Sequences

>Glyma18g48415.1   sequence type=predicted peptide   gene model=Glyma18g48415   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPLSLSSVSEQARENNVNNKFLLPRKPARQPNPIIYRKLRRGSAAGRFPEKQIEYPTNKELLRTIVYLRNATAVYYEPDKILPYNKAYIDEEDEEEWSTQSDEEKGQKELKKTINNSNDILTKKRKKKSSHIDKANKEPSISSSSSHVINIKEMRKTLERRGQGLTKNDSVSVSIRETFIQFCSTKIICPQEHRAALAVKLYGVQAALLSALGNPFENLSQSISSRNSSQILSLSKASTGFLPAILWTGMFIVSFVYTLIVVWSLAFRVPIISMLCLSLLYCLSVLVAAASGFDVMCGTFRMSGILFASLGVLGFVMLLLVVVLLVLFASWRCPKQDGGAK*

>Glyma18g48415.2   sequence type=predicted peptide   gene model=Glyma18g48415   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPLSLSSVSEQARENNVNNKFLLPRKPARQPNPIIYRKLRRGSAAGRFPEKQIEYPTNKELLRTIVYLRNATAVYYEPDKILPYNKAYIDEEDEEEWSTQSDEEKGQKELKKTINNSNDILTKKRKKKSSHIDKANKEPSISSSSSHVINIKEMRKTLERRGQGLTKNDSVSVSIRETFIQFCSTKIICPQEHRAALAVKLYGVQAALLSALGNPFENLSQSISSRNSSQILSLSKASTGFLPAILWTGMFIHQGLMSCVARLE*

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