Glyma18g48395 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g48395

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57821979
stop:	57827054
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48395

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23520	AT	Annotation by Michelle Graham. TAIR10: smr (Small MutS Related) domain-containing protein \| chr5:7929591-7931296 REVERSE LENGTH=435	SoyBase	E_val: 3.00E-98	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PF01713	PFAM	Smr domain	JGI		ISS
PF08590	PFAM	Domain of unknown function (DUF1771)	JGI		ISS
UniRef100_A2Q1V5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Smr protein/MutS2 C-terminal n=3 Tax=Medicago truncatula RepID=A2Q1V5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E86B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E86B related cluster n=1 Tax=unknown RepID=UPI000233E86B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48395

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g48395 not represented in the dataset	Glyma18g48395 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48395

Paralog	Evidence	Comments
Glyma09g37990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48395 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g248600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48395

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48395

Limit To All Plant Sequences

>Glyma18g48395.2   sequence type=transcript   gene model=Glyma18g48395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATTGCGATTCGCGTATTGTTTTGCTTCCGTGACGGCGTTATTGATTCCGTGACGGTGACGGCACGGCGGCTGTCAGATCTCTCTCTCTCTCTCTCTACGTCGTTTTTTCTCTCTCTAGAATCTATTTGTGGCCTCTGAGAGACCCTTTGGGAGGAAACGCCAGAAAACCCCAAACTTTTGTTCTTCCTCTCTTTGCAATCTCTATACAGAAGATTTATGGATAACAGGTGCAAATCTGGTTCACTGCAACACTGTTCCGTCGCAAATTTCTTCCACCGACAAGTGCTTGACTTCGTGGTTCCGTCGCTTTTTCAACCCTTCGATAGATTCATTCCTTGGTTACGCTTTCTATCTCCCAAATAACATTCAAGCTACCCTCTTTGTCCTGTTATTTTCTTCTGAAAAAAAAGTTATTGACTAGGACTTTTAGCAAGCAAACTCTCCAGATTGTGGCTTTCTGAGTTCTAAATCTGCACGAGTCTTCAGACAGAGAGATTGCAAAGTGATTTGAGACCAAATTATGGTGTAAGGACCAAGATGGCCGCTTCAGCCCATTCTTCTCTTAAGAAGATGTCATGGGCTAAGGGTCAATCCTCTGGTTGGACAGCTTTTGATCTCAAGCAGAGAAAGAATAAGGATTTTGAATCTGAAGTTGACGACGACCCTTTCCCAGCTATAGGCCCTACTGATCCTATAATCAAGAAGAATCATGTTCCCGCAAAGCCTTTCTCTTCAGTACTTCTCCCAACTAAAAATTTCCCCCCATTGAATGAGGATGGGAATAGCAAAAAGGCAATGCTAGGTTCTGATTCTGATGGAAAATATTGTGGGGCTACTACTCAGGAAGATGTTAATTTAGCTATCAAAAAGCTTAGAGAGCAGCATCTTTGGGCTGAACATAGCTTGATAGACGATATCTTCACTGCTGTTAATAACAATATCGACAAGGCCACATCTTTATTGGAAACAATGGCCCCTGCAGTGAATTTTGAAGAATCCAAAGTATCAATAAATCCTAGATCAACTACTTCAGATGATACTCCTTGTATGGATAAGACTGATGATAGTCTTACTTCAGAAAAGGTTGAGGATGACATTCCCTTCGATTATAATCTTGTTGATAATCTCCAAGACAATGATAAGGACTTGGAGGATAGAAATGCTCCCTCAGGTCAAAAGCTATCTGGTGTTGATTACTTGAGATGCAAAATGAAACTCTTGAATTCTGTTCCTGTTGAGCCTGAATGGGAGGATGATGATATTTACATTAGCAATCGAAAGGATGCATTGAGGACAATGAGGTTAGCATCACGCCATTCTAAGGCAGCTTCTAGTGCTTTTCTAAGAGGTGATCATTTTTCTGCTCAACATCATTCAATGAAAGCTCGGGCGGAATGGCATACTGCTGAAGAACTTAATTCTGATGCAGCCAAAAAAATTTTAAGTATCAGGAATAATGAAAATGATATCTGGAGACTTGATTTGCATGGTCTTCATGCAACCGAAGCTATTCAAGCATTGCAAGAACATCTCTACAGAATTGAATGCCAAGGCTTCTCAAAGAGTTCAGCCACTTCAAATGGAGTGAAGGAAAATGGGCTTGGACATTCTACTCTTGGATCTTTCAATTTCATGGACAGGGAAAAATTGGATACACAAGCACCATTACGGCTTAGACCGTTAGCTTTACATGTCATAACAGGCATCGGTAATCACAGTCGAGGACTGGCGGCTCTTCCTGCAGCTGTCAGAAGTTTCCTCAATGAAAACAGGTACCGTTTTGAGGAGATGAGACCAGGAGTAATTACAGTGTGGCCCAAGTTTCGTCAAAACTGATTTTTGAGTCCCCGTTAGAAACTTGTTCTTGTATTGTACCATTTCATAGGGATCATATACTTTATGAGTATTTAGCAGTGGTGAGATTTAATTCCACATATATTGGTCTCCCTGTTGATGTAAAATAAAACATTTGCCTTGGCATTGAAAATTAATTCAGATGGAATTATTTATTTCAGACATCATGCTTGTTCTATTCTACATTTTCTGCAATTACGACTTCATGTCTTC

>Glyma18g48395.3   sequence type=transcript   gene model=Glyma18g48395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATTGCGATTCGCGTATTGTTTTGCTTCCGTGACGGCGTTATTGATTCCGTGACGGTGACGGCACGGCGGCTGTCAGATCTCTCTCTCTCTCTCTCTACGTCGTTTTTTCTCTCTCTAGAATCTATTTGTGGCCTCTGAGAGACCCTTTGGGAGGAAACGCCAGAAAACCCCAAACTTTTGTTCTTCCTCTCTTTGCAATCTCTATACAGAAGATTTATGGATAACAGGTGCAAATCTGGTTCACTGCAACACTGTTCCGTCGCAAATTTCTTCCACCGACAAGTGCTTGACTTCGTGGTTCCGTCGCTTTTTCAACCCTTCGATAGATTCATTCCTTGGTTACGCTTTCTATCTCCCAAATAACATTCAAGCTACCCTCTTTGTCCTGTTATTTTCTTCTGAAAAAAAAGGGCTTACAGTTATTGACTAGGACTTTTAGCAAGCAAACTCTCCAGATTGTGGCTTTCTGAGTTCTAAATCTGCACGAGTCTTCAGACAGAGAGATTGCAAAGTGATTTGAGACCAAATTATGGTGTAAGGACCAAGATGGCCGCTTCAGCCCATTCTTCTCTTAAGAAGATGTCATGGGCTAAGGGTCAATCCTCTGGTTGGACAGCTTTTGATCTCAAGCAGAGAAAGAATAAGGATTTTGAATCTGAAGTTGACGACGACCCTTTCCCAGCTATAGGCCCTACTGATCCTATAATCAAGAAGAATCATGTTCCCGCAAAGCCTTTCTCTTCAGTACTTCTCCCAACTAAAAATTTCCCCCCATTGAATGAGGATGGGAATAGCAAAAAGGCAATGCTAGGTTCTGATTCTGATGGAAAATATTGTGGGGCTACTACTCAGGAAGATGTTAATTTAGCTATCAAAAAGCTTAGAGAGCAGCATCTTTGGGCTGAACATAGCTTGATAGACGATATCTTCACTGCTGTTAATAACAATATCGACAAGGCCACATCTTTATTGGAAACAATGGCCCCTGCAGTGAATTTTGAAGAATCCAAAGTATCAATAAATCCTAGATCAACTACTTCAGATGATACTCCTTGTATGGATAAGACTGATGATAGTCTTACTTCAGAAAAGGTTGAGGATGACATTCCCTTCGATTATAATCTTGTTGATAATCTCCAAGACAATGATAAGGACTTGGAGGATAGAAATGCTCCCTCAGGTCAAAAGCTATCTGGTGTTGATTACTTGAGATGCAAAATGAAACTCTTGAATTCTGTTCCTGTTGAGCCTGAATGGGAGGATGATGATATTTACATTAGCAATCGAAAGGATGCATTGAGGACAATGAGGTTAGCATCACGCCATTCTAAGGCAGCTTCTAGTGCTTTTCTAAGAGGTGATCATTTTTCTGCTCAACATCATTCAATGAAAGCTCGGGCGGAATGGCATACTGCTGAAGAACTTAATTCTGATGCAGCCAAAAAAATTTTAAGTATCAGGAATAATGAAAATGATATCTGGAGACTTGATTTGCATGGTCTTCATGCAACCGAAGCTATTCAAGCATTGCAAGAACATCTCTACAGAATTGAATGCCAAGGCTTCTCAAAGAGTTCAGCCACTTCAAATGGAGTGAAGGAAAATGGGCTTGGACATTCTACTCTTGGATCTTTCAATTTCATGGACAGGGAAAAATTGGATACACAAGCACCATTACGGCTTAGACCGTTAGCTTTACATGTCATAACAGGTACCGTTTTGAGGAGATGAGACCAGGAGTAATTACAGTGTGGCCCAAGTTTCGTCAAAACTGATTTTTGAGTCCCCGTTAGAAACTTGTTCTTGTATTGTACCATTTCATAGGGATCATATACTTTATGAGTATTTAGCAGTGGTGAGATTTAATTCCACATATATTGGTCTCCCTGTTGATGTAAAATAAAACATTTGCCTTGGCATTGAAAATTAATTCAGATGGAATTATTTATTTCAGACATCATGCTTGTTCTATTCTACATTTTCTGCAATTACGACTTCATGTCTTC

Coding sequences of Glyma18g48395

Limit To All Plant Sequences

>Glyma18g48395.1   sequence type=CDS   gene model=Glyma18g48395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTTCAGCCCATTCTTCTCTTAAGAAGATGTCATGGGCTAAGGGTCAATCCTCTGGTTGGACAGCTTTTGATCTCAAGCAGAGAAAGAATAAGGATTTTGAATCTGAAGTTGACGACGACCCTTTCCCAGCTATAGGCCCTACTGATCCTATAATCAAGAAGAATCATGTTCCCGCAAAGCCTTTCTCTTCAGTACTTCTCCCAACTAAAAATTTCCCCCCATTGAATGAGGATGGGAATAGCAAAAAGGCAATGCTAGGTTCTGATTCTGATGGAAAATATTGTGGGGCTACTACTCAGGAAGATGTTAATTTAGCTATCAAAAAGCTTAGAGAGCAGCATCTTTGGGCTGAACATAGCTTGATAGACGATATCTTCACTGCTGTTAATAACAATATCGACAAGGCCACATCTTTATTGGAAACAATGGCCCCTGCAGTGAATTTTGAAGAATCCAAAGTATCAATAAATCCTAGATCAACTACTTCAGATGATACTCCTTGTATGGATAAGACTGATGATAGTCTTACTTCAGAAAAGGTTGAGGATGACATTCCCTTCGATTATAATCTTGTTGATAATCTCCAAGACAATGATAAGGACTTGGAGGATAGAAATGCTCCCTCAGGTCAAAAGCTATCTGGTGTTGATTACTTGAGATGCAAAATGAAACTCTTGAATTCTGTTCCTGTTGAGCCTGAATGGGAGGATGATGATATTTACATTAGCAATCGAAAGGATGCATTGAGGACAATGAGGTTAGCATCACGCCATTCTAAGGCAGCTTCTAGTGCTTTTCTAAGAGGTGATCATTTTTCTGCTCAACATCATTCAATGAAAGCTCGGGCGGAATGGCATACTGCTGAAGAACTTAATTCTGATGCAGCCAAAAAAATTTTAAGTATCAGGAATAATGAAAATGATATCTGGAGACTTGATTTGCATGGTCTTCATGCAACCGAAGCTATTCAAGCATTGCAAGAACATCTCTACAGAATTGAATGCCAAGGCTTCTCAAAGAGTTCAGCCACTTCAAATGGAGTGAAGGAAAATGGGCTTGGACATTCTACTCTTGGATCTTTCAATTTCATGGACAGGGAAAAATTGGATACACAAGCACCATTACGGCTTAGACCGTTAGCTTTACATGTCATAACAGGCATCGGTAATCACAGTCGAGGACTGGCGGCTCTTCCTGCAGCTGTCAGAAGTTTCCTCAATGAAAACAGGTACCGTTTTGAGGAGATGAGACCAGGAGTAATTACAGTGTGGCCCAAGTTTCGTCAAAACTGA

>Glyma18g48395.2   sequence type=CDS   gene model=Glyma18g48395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTTCAGCCCATTCTTCTCTTAAGAAGATGTCATGGGCTAAGGGTCAATCCTCTGGTTGGACAGCTTTTGATCTCAAGCAGAGAAAGAATAAGGATTTTGAATCTGAAGTTGACGACGACCCTTTCCCAGCTATAGGCCCTACTGATCCTATAATCAAGAAGAATCATGTTCCCGCAAAGCCTTTCTCTTCAGTACTTCTCCCAACTAAAAATTTCCCCCCATTGAATGAGGATGGGAATAGCAAAAAGGCAATGCTAGGTTCTGATTCTGATGGAAAATATTGTGGGGCTACTACTCAGGAAGATGTTAATTTAGCTATCAAAAAGCTTAGAGAGCAGCATCTTTGGGCTGAACATAGCTTGATAGACGATATCTTCACTGCTGTTAATAACAATATCGACAAGGCCACATCTTTATTGGAAACAATGGCCCCTGCAGTGAATTTTGAAGAATCCAAAGTATCAATAAATCCTAGATCAACTACTTCAGATGATACTCCTTGTATGGATAAGACTGATGATAGTCTTACTTCAGAAAAGGTTGAGGATGACATTCCCTTCGATTATAATCTTGTTGATAATCTCCAAGACAATGATAAGGACTTGGAGGATAGAAATGCTCCCTCAGGTCAAAAGCTATCTGGTGTTGATTACTTGAGATGCAAAATGAAACTCTTGAATTCTGTTCCTGTTGAGCCTGAATGGGAGGATGATGATATTTACATTAGCAATCGAAAGGATGCATTGAGGACAATGAGGTTAGCATCACGCCATTCTAAGGCAGCTTCTAGTGCTTTTCTAAGAGGTGATCATTTTTCTGCTCAACATCATTCAATGAAAGCTCGGGCGGAATGGCATACTGCTGAAGAACTTAATTCTGATGCAGCCAAAAAAATTTTAAGTATCAGGAATAATGAAAATGATATCTGGAGACTTGATTTGCATGGTCTTCATGCAACCGAAGCTATTCAAGCATTGCAAGAACATCTCTACAGAATTGAATGCCAAGGCTTCTCAAAGAGTTCAGCCACTTCAAATGGAGTGAAGGAAAATGGGCTTGGACATTCTACTCTTGGATCTTTCAATTTCATGGACAGGGAAAAATTGGATACACAAGCACCATTACGGCTTAGACCGTTAGCTTTACATGTCATAACAGGCATCGGTAATCACAGTCGAGGACTGGCGGCTCTTCCTGCAGCTGTCAGAAGTTTCCTCAATGAAAACAGGTACCGTTTTGAGGAGATGAGACCAGGAGTAATTACAGTGTGGCCCAAGTTTCGTCAAAACTGA

>Glyma18g48395.3   sequence type=CDS   gene model=Glyma18g48395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTTCAGCCCATTCTTCTCTTAAGAAGATGTCATGGGCTAAGGGTCAATCCTCTGGTTGGACAGCTTTTGATCTCAAGCAGAGAAAGAATAAGGATTTTGAATCTGAAGTTGACGACGACCCTTTCCCAGCTATAGGCCCTACTGATCCTATAATCAAGAAGAATCATGTTCCCGCAAAGCCTTTCTCTTCAGTACTTCTCCCAACTAAAAATTTCCCCCCATTGAATGAGGATGGGAATAGCAAAAAGGCAATGCTAGGTTCTGATTCTGATGGAAAATATTGTGGGGCTACTACTCAGGAAGATGTTAATTTAGCTATCAAAAAGCTTAGAGAGCAGCATCTTTGGGCTGAACATAGCTTGATAGACGATATCTTCACTGCTGTTAATAACAATATCGACAAGGCCACATCTTTATTGGAAACAATGGCCCCTGCAGTGAATTTTGAAGAATCCAAAGTATCAATAAATCCTAGATCAACTACTTCAGATGATACTCCTTGTATGGATAAGACTGATGATAGTCTTACTTCAGAAAAGGTTGAGGATGACATTCCCTTCGATTATAATCTTGTTGATAATCTCCAAGACAATGATAAGGACTTGGAGGATAGAAATGCTCCCTCAGGTCAAAAGCTATCTGGTGTTGATTACTTGAGATGCAAAATGAAACTCTTGAATTCTGTTCCTGTTGAGCCTGAATGGGAGGATGATGATATTTACATTAGCAATCGAAAGGATGCATTGAGGACAATGAGGTTAGCATCACGCCATTCTAAGGCAGCTTCTAGTGCTTTTCTAAGAGGTGATCATTTTTCTGCTCAACATCATTCAATGAAAGCTCGGGCGGAATGGCATACTGCTGAAGAACTTAATTCTGATGCAGCCAAAAAAATTTTAAGTATCAGGAATAATGAAAATGATATCTGGAGACTTGATTTGCATGGTCTTCATGCAACCGAAGCTATTCAAGCATTGCAAGAACATCTCTACAGAATTGAATGCCAAGGCTTCTCAAAGAGTTCAGCCACTTCAAATGGAGTGAAGGAAAATGGGCTTGGACATTCTACTCTTGGATCTTTCAATTTCATGGACAGGGAAAAATTGGATACACAAGCACCATTACGGCTTAGACCGTTAGCTTTACATGTCATAACAGGTACCGTTTTGAGGAGATGA

Predicted protein sequences of Glyma18g48395

Limit To All Plant Sequences

>Glyma18g48395.1   sequence type=predicted peptide   gene model=Glyma18g48395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASAHSSLKKMSWAKGQSSGWTAFDLKQRKNKDFESEVDDDPFPAIGPTDPIIKKNHVPAKPFSSVLLPTKNFPPLNEDGNSKKAMLGSDSDGKYCGATTQEDVNLAIKKLREQHLWAEHSLIDDIFTAVNNNIDKATSLLETMAPAVNFEESKVSINPRSTTSDDTPCMDKTDDSLTSEKVEDDIPFDYNLVDNLQDNDKDLEDRNAPSGQKLSGVDYLRCKMKLLNSVPVEPEWEDDDIYISNRKDALRTMRLASRHSKAASSAFLRGDHFSAQHHSMKARAEWHTAEELNSDAAKKILSIRNNENDIWRLDLHGLHATEAIQALQEHLYRIECQGFSKSSATSNGVKENGLGHSTLGSFNFMDREKLDTQAPLRLRPLALHVITGIGNHSRGLAALPAAVRSFLNENRYRFEEMRPGVITVWPKFRQN*

>Glyma18g48395.2   sequence type=predicted peptide   gene model=Glyma18g48395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASAHSSLKKMSWAKGQSSGWTAFDLKQRKNKDFESEVDDDPFPAIGPTDPIIKKNHVPAKPFSSVLLPTKNFPPLNEDGNSKKAMLGSDSDGKYCGATTQEDVNLAIKKLREQHLWAEHSLIDDIFTAVNNNIDKATSLLETMAPAVNFEESKVSINPRSTTSDDTPCMDKTDDSLTSEKVEDDIPFDYNLVDNLQDNDKDLEDRNAPSGQKLSGVDYLRCKMKLLNSVPVEPEWEDDDIYISNRKDALRTMRLASRHSKAASSAFLRGDHFSAQHHSMKARAEWHTAEELNSDAAKKILSIRNNENDIWRLDLHGLHATEAIQALQEHLYRIECQGFSKSSATSNGVKENGLGHSTLGSFNFMDREKLDTQAPLRLRPLALHVITGIGNHSRGLAALPAAVRSFLNENRYRFEEMRPGVITVWPKFRQN*

>Glyma18g48395.3   sequence type=predicted peptide   gene model=Glyma18g48395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASAHSSLKKMSWAKGQSSGWTAFDLKQRKNKDFESEVDDDPFPAIGPTDPIIKKNHVPAKPFSSVLLPTKNFPPLNEDGNSKKAMLGSDSDGKYCGATTQEDVNLAIKKLREQHLWAEHSLIDDIFTAVNNNIDKATSLLETMAPAVNFEESKVSINPRSTTSDDTPCMDKTDDSLTSEKVEDDIPFDYNLVDNLQDNDKDLEDRNAPSGQKLSGVDYLRCKMKLLNSVPVEPEWEDDDIYISNRKDALRTMRLASRHSKAASSAFLRGDHFSAQHHSMKARAEWHTAEELNSDAAKKILSIRNNENDIWRLDLHGLHATEAIQALQEHLYRIECQGFSKSSATSNGVKENGLGHSTLGSFNFMDREKLDTQAPLRLRPLALHVITGTVLRR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain