Glyma18g48370 - SoyBase

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Report for Sequence Feature Glyma18g48370

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57796389
stop:	57804398
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79500	AT	Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein \| chr1:29903604-29905989 FORWARD LENGTH=290	SoyBase	E_val: 6.00E-179	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010306	GO-bp	Annotation by Michelle Graham. GO Biological Process: rhamnogalacturonan II biosynthetic process	SoyBase	N/A	ISS
GO:0019294	GO-bp	Annotation by Michelle Graham. GO Biological Process: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-deoxy-8-phosphooctulonate synthase activity	SoyBase	N/A	ISS
PTHR21057	Panther	PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE	JGI		ISS
PTHR21057:SF2	Panther	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE	JGI		ISS
PF00793	PFAM	DAHP synthetase I family	JGI		ISS
UniRef100_O50044	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-dehydro-3-deoxyphosphooctonate aldolase n=2 Tax=Pisum sativum RepID=KDSA_PEA	SoyBase	E_val: 4.00E-177	ISS
UniRef100_UPI000233E869	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E869 related cluster n=1 Tax=unknown RepID=UPI000233E869	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g48370 not represented in the dataset	Glyma18g48370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48370

Paralog	Evidence	Comments
Glyma09g38010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g248300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48370

Limit To All Plant Sequences

>Glyma18g48370.2   sequence type=transcript   gene model=Glyma18g48370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGTGCTTTGGAATTTGGAGTGCAATAATTCTGATTCTACCGTCATCAACTAGGAGAAGAAGCTTCATTTTCTGCAAAATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTAGGGTAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAAAAAAAATGGTGATGGTTTTCAGTTATTCTGAATGTAATTTCTTTACCATTGGTCTTTTAAGATTGTTCAAGGGTGAATGCAAAACTGTCTCCTCTCACAAGTTCCTTATAAGGAGAGTTTATCTTAAAAATATTATTTGATGATCAATGCATGTTACTCTGAAGTGGTAACACTATACCAACTCAAGTTTGTCACATATCCTGTGTAGCCTTAATCATGTCAGTTACTAAAGTTGAGGCAATTAATTGAATATTAAGATATAGGTAGATTAATTATTAAATTTATTATTAGGTAAATTAATTTATTATTTTTGTCATTTCTCCCAAGTACTTTCTACAAGGTTTTCAAGCCATTTCTAAAATATCTCAAAATTTTGGCTGTGGCTTAGGGATATTGTTTACGATTTAGGAGAAATATCAGAAAATGATGTATAAGGATATATGGTTTAATGCATGATCTACTTGGTAAATTGTATTGGTGCCTCATTATTTAAAAACACTATCAGTGGTTATGCACTAATTGTTGGTGGTTCCAATGACGCAATGATATTTGAACTGATAATAGAT

>Glyma18g48370.3   sequence type=transcript   gene model=Glyma18g48370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGTGCTTTGGAATTTGGAGTGCAATAATTCTGATTCTACCGTCATCAACTAGGAGAAGAAGCTTCATTTTCTGCAAAATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTTTTTGATATATTGTAGAGGGTAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAAAAAAAATGGTGATGGTTTTCAGTTATTCTGAATGTAATTTCTTTACCATTGGTCTTTTAAGATTGTTCAAGGGTGAATGCAAAACTGTCTCCTCTCACAAGTTCCTTATAAGGAGAGTTTATCTTAAAAATATTATTTGATGATCAATGCATGTTACTCTGAAGTGGTAACACTATACCAACTCAAGTTTGTCACATATCCTGTGTAGCCTTAATCATGTCAGTTACTAAAGTTGAGGCAATTAATTGAATATTAAGATATAGGTAGATTAATTATTAAATTTATTATTAGGTAAATTAATTTATTATTTTTGTCATTTCTCCCAAGTACTTTCTACAAGGTTTTCAAGCCATTTCTAAAATATCTCAAAATTTTGGCTGTGGCTTAGGGATATTGTTTACGATTTAGGAGAAATATCAGAAAATGATGTATAAGGATATATGGTTTAATGCATGATCTACTTGGTAAATTGTATTGGTGCCTCATTATTTAAAAACACTATCAGTGGTTATGCACTAATTGTTGGTGGTTCCAATGACGCAATGATATTTGAACTGATAATAGAT

Coding sequences of Glyma18g48370

Limit To All Plant Sequences

>Glyma18g48370.1   sequence type=CDS   gene model=Glyma18g48370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTAGGGTAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAA

>Glyma18g48370.2   sequence type=CDS   gene model=Glyma18g48370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTAGGGTAAGCAAAGGGAAGCAACGGTTCAACATTGATCTCACACCATTTCGTGAATAA

>Glyma18g48370.3   sequence type=CDS   gene model=Glyma18g48370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCCTCTGCGGCATTGCTATTTAACCACCTCAAGGGTGCAGACCCGTTCTTCCTGCTAGCGGGTCCTAATGTGATTGAATCGGAGGAGCACATTCTGCGGATGGCTAAGAACATCAAGAGTGTTGCATCTGAAGTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGATACTCGAGAAGGTAAAAATAGCTTATGACATTCCTATAGTGACAGATGTGCATGAGACCATCCAGTGTGAAGCAGTTGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAACAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTGATGACAAATTCAGCTGAAAAGGTTCGGTTAGCTGGAAATCCTAATGTGATGGTTTGTGAGAGAGGAACAATGTTTGGATACAATGATTTGATTGTTGATCCACGTAACTTGGAGTGGATGAGAGAAGCCAATTGTCCCATTGTAGCTGATATAACTCACTCACTACAACAGCCTGCTGGAAAGATGTTGGATGGGGGAGGTGTTGCTAGTGGAGGTCTTCGAGAACTAATACCTTGCATTGCAAGGACAGCAGTTGCCGTTGGAGTGGATGGGATCTTCATGGAGGTGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGCCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTTTTTGA

Predicted protein sequences of Glyma18g48370

Limit To All Plant Sequences

>Glyma18g48370.1   sequence type=predicted peptide   gene model=Glyma18g48370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKSVASEVGIPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKIAYDIPIVTDVHETIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADITHSLQQPAGKMLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHFKELLEELVAIARVSKGKQRFNIDLTPFRE*

>Glyma18g48370.2   sequence type=predicted peptide   gene model=Glyma18g48370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKSVASEVGIPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKIAYDIPIVTDVHETIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADITHSLQQPAGKMLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHFKELLEELVAIARVSKGKQRFNIDLTPFRE*

>Glyma18g48370.3   sequence type=predicted peptide   gene model=Glyma18g48370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSAALLFNHLKGADPFFLLAGPNVIESEEHILRMAKNIKSVASEVGIPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKIAYDIPIVTDVHETIQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMTNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPIVADITHSLQQPAGKMLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHFKELLEELVAIAF*

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