Glyma18g48350 - SoyBase

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Report for Sequence Feature Glyma18g48350

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57781248
stop:	57786630
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17070	AT	Annotation by Michelle Graham. TAIR10: peptidyl-prolyl cis-trans isomerases \| chr4:9595523-9598066 REVERSE LENGTH=343	SoyBase	E_val: 8.00E-156	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003755	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity	SoyBase	N/A	ISS
KOG0884	KOG	Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase	JGI		ISS
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI		ISS
UniRef100_A2Q1W0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase, cyclophilin type n=1 Tax=Medicago truncatula RepID=A2Q1W0_MEDTR	SoyBase	E_val: 8.00E-179	ISS
UniRef100_UPI000233E707	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E707 related cluster n=1 Tax=unknown RepID=UPI000233E707	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48350

Paralog	Evidence	Comments
Glyma09g38040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g248100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48350

Limit To All Plant Sequences

>Glyma18g48350.1   sequence type=CDS   gene model=Glyma18g48350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGTCGCCAAAACGACTCAGATTTCGGTAGATTCGCGATTCTCGTCCTCTTCTTGATAGGTGCAATCTCCTGCTCCGCGGTGTACCTTTTCCTTACTGTGGTCTTCAGGCCCAGCACCGAGTCTCTGCCTTCAGTGGATGATGATGTGGGGGTTGCAGAAGAGGAGAATTGTTGCAGAGGGATTGAAAATTTGGAGCTTTGGGGTGATGCTGTGAAATGGGGTTCTGAATTTAGGTTGAATTCCTCGGAGGAATGTTGCATGGCTTGTAAGAGAATGTGTAGCGGCGAGGGAGGGCCTTGTATGTGTAATTCATGGGTGTATTGTGGAGATAGAGAGGCTTGTGGACCTAGATTTGGCGAGTGTTGGTTAAAAAAACAAAAGGATGCTTTAAATCCTGATCGACGAGACTCGGGAGATCTAGTAATGTGGACTTCTGGGTTTGTCTTTGATAAGGGAGAGGGAATTGTTGGTATGGAAACTGACCATGGAATTCTTCGAATAAAACTTTTGCCTGAATGTGCTCCACATTCTGTTTCCTACATTCTGGAGCTGTTGGCATTGCCACATTGTGTTGGTTGCCAGCTTCATCGTGCTGAAAGCCGAGGAAGCTTTTGGGATTCAGAAGGAAACCACATTAAAAAGGCTCCATATGGTCCTCCTTTCGCACTTATTCAAGGAACATTGGAATCCTATGGGTCTATGTTCAAGGATATTCCTAAAGAGCACTGTCCTACCATAAGAAGAGGATCTGTTGCATGGGTTGGTTCTGGTCCAGAATTCTTCATCAGCCTCGCCGATCACGGGGAATGGAGAAATGCATACACTGTGTTTGGTTCTGTTCTATCTGAAGATATGGAAATTTTAGAGAAAATTGCTCAGCTTCCAACTAAATCAGAAATTTGGAATAATATTAAAGTTTCTGTCTTGGAGAACCCAGTTTCATTACGGTTTCGGAGAATGAACAAAAAGTCTTAA

Predicted protein sequences of Glyma18g48350

Limit To All Plant Sequences

>Glyma18g48350.1   sequence type=predicted peptide   gene model=Glyma18g48350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRRQNDSDFGRFAILVLFLIGAISCSAVYLFLTVVFRPSTESLPSVDDDVGVAEEENCCRGIENLELWGDAVKWGSEFRLNSSEECCMACKRMCSGEGGPCMCNSWVYCGDREACGPRFGECWLKKQKDALNPDRRDSGDLVMWTSGFVFDKGEGIVGMETDHGILRIKLLPECAPHSVSYILELLALPHCVGCQLHRAESRGSFWDSEGNHIKKAPYGPPFALIQGTLESYGSMFKDIPKEHCPTIRRGSVAWVGSGPEFFISLADHGEWRNAYTVFGSVLSEDMEILEKIAQLPTKSEIWNNIKVSVLENPVSLRFRRMNKKS*

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