SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17800 | AT | Annotation by Michelle Graham. TAIR10: Predicted AT-hook DNA-binding family protein | chr4:9895549-9896427 REVERSE LENGTH=292 | SoyBase | E_val: 7.00E-98 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010359 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| PF03479 | PFAM | Domain of unknown function (DUF296) | JGI | ISS | |
| UniRef100_G7KSI4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT-hook DNA-binding protein n=1 Tax=Medicago truncatula RepID=G7KSI4_MEDTR | SoyBase | E_val: 1.00E-139 | ISS |
| UniRef100_I1N437 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N437_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g48260 not represented in the dataset |
Glyma18g48260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g38120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g247200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g48260.1 sequence type=CDS gene model=Glyma18g48260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGGCATAGACTTGGGTTCAGCATCACATTTTGTTCATCATCGCCTTGAACGCCCTGACCTTGAAGACGATGAGAACCAACAAGACCAAGACAACAACCTTAACAATCACGAAGGGCTTGACCTAGTTACACCAAATTCAGGTCCTGGTGATGTTGTTGGTCGCAGGCCAAGAGGAAGACCTCCAGGTTCAAAGAACAAGCCAAAACCACCAGTTATCATCACAAGAGAGAGTGCAAACACCCTTAGGGCTCACATCCTTGAAGTTAGTAGTGGTTGTGATGTCTTTGAATCAGTCGCTACCTATGCAAGGAAGCGACAAAGAGGGATCTGTGTCCTTAGTGGGAGTGGAACCGTGACCAACGTGACGTTGAGACAGCCAGCTGCAGCAGGTGCCGTCGTCACGCTGCACGGAAGGTTTGAGATCCTGTCTTTGTCAGGATCGTTCCTCCCACCTCCCGCTCCACCAGGTGCTACAAGTTTGACCGTGTTCCTTGGTGGAGGACAGGGTCAAGTGGTGGGAGGAAATGTTGTTGGTCCTTTGGTGGCTTCTGGGCCTGTTATTGTTATTGCTTCATCTTTTACTAATGTAGCATATGAGAGGTTGCCCTTGGATGAAGAGGAATCTATGCAGATGCAACAAGGGCAATCATCTGCTGGCGGTGGTGGTAGTGGTGGTGGAGTCAGTAATAACTCTTTTCCGGACCCGTCTTCTGGGCTTCCATTCTTCAATTTGCCCCTTAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAACTCTGGTGGAAGGCAATCTTACTGA
>Glyma18g48260.1 sequence type=predicted peptide gene model=Glyma18g48260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGIDLGSASHFVHHRLERPDLEDDENQQDQDNNLNNHEGLDLVTPNSGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFESVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEEESMQMQQGQSSAGGGGSGGGVSNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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