Glyma18g48250 - SoyBase

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Report for Sequence Feature Glyma18g48250

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57713114
stop:	57714599
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05675	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr1:1701213-1702715 REVERSE LENGTH=453	SoyBase	E_val: 4.00E-101	ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_G7KSI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7KSI0_MEDTR	SoyBase	E_val: 4.00E-163	ISS
UniRef100_I1N436	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N436_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g48250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g247100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48250

Limit To All Plant Sequences

>Glyma18g48250.1   sequence type=CDS   gene model=Glyma18g48250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCGTCAATAGTATATACTACCATGTACAGCAAGGGAAGTTGCGTGTTCCCCTCACAAAAAATGAGATTTCCCTTCCTTTGTTGCCCAAACTTCAACTTGAAGACATGCCCTCATTCCTCTCCTCCACTGATGGGGAGAATTTAGTTTTGCTCGATTTGGCAGTGGCTCAGTTCTCCAATGTCGACAAGGCTGATTGGATCCTTTGCAATTCATTCTACGAGTTGGAAAAAGAGGTAAATAATTGGACATTGAAGATTTGGCCTAAATTTAGGACTATAGGACCATGCATAACATCTATGGTTTTAAACAAGCGACTTACAGATGATAATGATGAAGATGATGGTGTTACACAATTTAAGAGTGAAGAATGCATGAAATGGTTAGATGATAAACCAAAACAATCTGTTGTTTATGTTTCTTTTGGGTCCATCGCAGCACTCAACGAAGAGCAAATAAAGGAAATAGCTTATAGTTTGAGAGATGGTGAAAATTACTTTTTGTGGGTGGTGAGGGCCTCAGAAGAAACTAAGCTTCCCAAAGATTTTGAAAAGATATCAGAGAAGGGTTTAGTGATAAGGTGGTGCTCGCAACTAAAAGTCCTAGACCATGAGGCTATAGGGTGTTTTGTAACACATTGTGGTTGGAACTCCACATTGGAAGCCTTGAGTTTAGGAGTTCCAGTGGTTGCAATGCCATATTGGTCTGACCAAAGTACAAATGCAAAGCAAATTGTAGATGTCTGGAAAATGGGAATCAGAGCCACAGTTGACGATGAGAAAAAAATTGTGAGAAGAGAAGTATTAAAGCGCTGCATAATGGAAATAATGAAGAGTGAGAGAGGCAAAGAGGTGAAAAGCAATATGGTGCAATGGAAGGCTTTGGCTGCACGAGCTGTTAGTGAGGAAGGAAGTTCTCATAAAAACATTGCAGAATTCGTGAATAGCTTGTTCAATTTACAACAGAGAATTGCAAATTATCCTGATTAA

Predicted protein sequences of Glyma18g48250

Limit To All Plant Sequences

>Glyma18g48250.1   sequence type=predicted peptide   gene model=Glyma18g48250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVNSIYYHVQQGKLRVPLTKNEISLPLLPKLQLEDMPSFLSSTDGENLVLLDLAVAQFSNVDKADWILCNSFYELEKEVNNWTLKIWPKFRTIGPCITSMVLNKRLTDDNDEDDGVTQFKSEECMKWLDDKPKQSVVYVSFGSIAALNEEQIKEIAYSLRDGENYFLWVVRASEETKLPKDFEKISEKGLVIRWCSQLKVLDHEAIGCFVTHCGWNSTLEALSLGVPVVAMPYWSDQSTNAKQIVDVWKMGIRATVDDEKKIVRREVLKRCIMEIMKSERGKEVKSNMVQWKALAARAVSEEGSSHKNIAEFVNSLFNLQQRIANYPD*

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