Glyma18g48220 - SoyBase

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Report for Sequence Feature Glyma18g48220

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57699235
stop:	57702631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48370	AT	Annotation by Michelle Graham. TAIR10: Thioesterase/thiol ester dehydrase-isomerase superfamily protein \| chr5:19598666-19600512 REVERSE LENGTH=438	SoyBase	E_val: 0	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
GO:0047617	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acyl-CoA hydrolase activity	SoyBase	N/A	ISS
KOG2763	KOG	Acyl-CoA thioesterase	JGI		ISS
PTHR12655	Panther	ACYL-COA THIOESTERASE	JGI		ISS
PF03061	PFAM	Thioesterase superfamily	JGI		ISS
UniRef100_A2Q5W7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl-CoA thioesterase n=1 Tax=Medicago truncatula RepID=A2Q5W7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N434	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N434_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48220

Paralog	Evidence	Comments
Glyma09g38150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g246900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48220

Limit To All Plant Sequences

>Glyma18g48220.1   sequence type=CDS   gene model=Glyma18g48220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGAATTCCTCTCCTTCCAACAACACAATTGCCGTGAATGGAACAATCCCCGTCGCTTCCACGTTCGCAACCGCCACCGCGCCGTCGGATAACCCTCCGCCGGCGGACAGCTCCGGCGACCGGAAACCCATCGCCCTGTGGCCGGGGATGTACCATTCTCCGGTGACCACCGCCCTATGGGAAGCTCGCAGCAATATTTTCGAGAGGCTTCTGGACCCTCCCAGGGACGCTCCTCCGCAGAGTGAATTGCTCACGAGAACCCCCTCGCAGAGCAGGACCAGCATCTTGTACAACTTCTCCTCTGATTTCGTGCTCAGAGAACAGTATAGGGATCCCTGGAATGAGGTTCGAATTGGGAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGCATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTTCAGTTGATAAGATTGTACTAAAGAAGCCAATTAGTGTTGACATTGATCTCAAGATAGTTGGTTTTGTTATATGGGTTGGGCACTCTTCAATAGAGATTCAACTGGAGGTTACTCAGTCCAATGAAGAGGGCAATGATTCAGACTCAGTAGCACTGACAGCCAACTTCATATTTGTTGCTCGGGACTCAAAAACTGGGAAAGCTGCTCCGGTGAATCGACTTTCACCAGAAAATGCTCATGAAAAACTTCTGTTTGAACAAGCTGAGGCAAGAAGTAATTTGAGGAAAACGAAAAGAGGAGGGGAAAAGAGGGACTTTGAGAATGGGGAGAAAAATAGGCTTCGGGCCCTATTGGCTGAAGGAAGAATCTTCTGTGACATGCCAGCTTTAGCAGACCGAAACAGCATTCTTCTAAAGGATACCAGCCTTGAGAATGCCTTAATATGCCAGCCACAGCAAAGGAACATCCATGGTCGAATATTTGGAGGTTTCTTGATGCATCGTGCATTTGAATTGGCTTTCTCAACAGCATATGCCTTTGCTGGATTAGCTCCTTGCTTTCTTGAAGTTGATCATGTTGATTTCTTAAGACCTGTTGATGTAGGGGACTTTTTGCGTCTCAAATCTTGTGTTCTGTACACGGAGGTTCACGATCCAGATCAGCCACTTATCAACGTTGAAGTTGTTGCTCATGTTACACGACCTGAGCTGCGTACTAGTGAGGTATCAAATACTTTCCACTTCTCTTTCACTGTCCGTCCAGAAGCCAAGGCGATGAAAAATGGATTTAAACTTCGCAATGTAGTACCAGCAACAGAGGAAGAAGCACGACGTATATTAGAGCGCATAGATGCTGACAACTTGAATGAATTCTTCAGAGCATAA

Predicted protein sequences of Glyma18g48220

Limit To All Plant Sequences

>Glyma18g48220.1   sequence type=predicted peptide   gene model=Glyma18g48220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLNSSPSNNTIAVNGTIPVASTFATATAPSDNPPPADSSGDRKPIALWPGMYHSPVTTALWEARSNIFERLLDPPRDAPPQSELLTRTPSQSRTSILYNFSSDFVLREQYRDPWNEVRIGKLLEDLDALAGTISVKHCSDEASTTRPLIVVTASVDKIVLKKPISVDIDLKIVGFVIWVGHSSIEIQLEVTQSNEEGNDSDSVALTANFIFVARDSKTGKAAPVNRLSPENAHEKLLFEQAEARSNLRKTKRGGEKRDFENGEKNRLRALLAEGRIFCDMPALADRNSILLKDTSLENALICQPQQRNIHGRIFGGFLMHRAFELAFSTAYAFAGLAPCFLEVDHVDFLRPVDVGDFLRLKSCVLYTEVHDPDQPLINVEVVAHVTRPELRTSEVSNTFHFSFTVRPEAKAMKNGFKLRNVVPATEEEARRILERIDADNLNEFFRA*

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