Glyma18g48200 - SoyBase

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Report for Sequence Feature Glyma18g48200

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57682701
stop:	57687579
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25480	AT	Annotation by Michelle Graham. TAIR10: Rhodanese/Cell cycle control phosphatase superfamily protein \| chr3:9235591-9236598 REVERSE LENGTH=264	SoyBase	E_val: 6.00E-76	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR11177	Panther	CHITINASE	JGI		ISS
PTHR11177:SF87	Panther		JGI		ISS
UniRef100_G7KSH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyproline-rich glycoprotein-like protein n=1 Tax=Medicago truncatula RepID=G7KSH3_MEDTR	SoyBase	E_val: 3.00E-135	ISS
UniRef100_I1N432	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N432_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48200

Paralog	Evidence	Comments
Glyma09g38176	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g246700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48200

Limit To All Plant Sequences

>Glyma18g48200.2   sequence type=CDS   gene model=Glyma18g48200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTCTGTCTCTTCTTCTCTCCCCTTATCCACTCTCCACCAAAACCCACAAATTCAGCACCTTGAAACCCTTCTCTCATTTCTCAAACCCTAAAATACCACCTTCTCAACCCCATTCACCCTCTCTTTCTGCACTCCAAACACCTTCTCTTAACTCCCTCCAAAACCCATTAACAAAACCTTTCTTATCATTTACCATGCTCAACCTCTTCACTCCACTTCCCTGCCTCGCTGACGTAGCCTCCGACGACGCCGGAAAAATAAACCTGGAATCGGTGCTGGTTTCCATCGACAACTTCTTCAATCGGTACCCGTTTTTCGTCGCCGGTTGCACCTTTATTTGGCTGGTGGTGATTCCTCTGGCGGAAGAGTACTTGAAGAAGTGCAAGTTCGTGTCGGCGATTGACGCGTTCAGGAAGCTCCGCGATGACCCGAATGCGCAGCTGCTGGACATAAGGGACGAGAAGAACGTGAGGTTTCTGAAGTCTTCGAATTTGAAAATGTTCGAGAAGGAAGTGGCGCAGGTCGAGTTCGCTGAGGATGGGAACGAGGACGAGTTTGTGAAGAAGGTGTTGGGGAGGTTCAAGGACGCGCCTAACACTGTTGTATGTGTTTTGGACAGTTTTGACGGTAATTCCATGAAAGTTGCCGAGGTACTGTTCAAGAATGGTTTCAAAGAGGCCTATGCAATCAGAGGTGGAGTTAGAGGCCAGCAAGGTTGGATGGCTATACAGGATTCCCTTTTGCCCCCTTCTGTGCATATAAGGAAAAGGGTAAAAGCTTCAAAGAAACTCAATACAAATGGAAATGGAGCCATCCAGCAAAATGATAGTAACAATAATAGTTCCTTAACCCAAGATAGATCTTCTGTTGAAAACCAAACAACAGACGATGGTCATGTGAAAAGCTCTGTAGAGTTTATTTCAGAAGTGAAAACTGGTTCTGTAGCATCCTCCTCTCCTTATCCCAATTACCCGGATTTGAAGCCACCATCATCTCCAACTCCGTCAAAGCCACAATAG

Predicted protein sequences of Glyma18g48200

Limit To All Plant Sequences

>Glyma18g48200.2   sequence type=predicted peptide   gene model=Glyma18g48200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSLSLLLSPYPLSTKTHKFSTLKPFSHFSNPKIPPSQPHSPSLSALQTPSLNSLQNPLTKPFLSFTMLNLFTPLPCLADVASDDAGKINLESVLVSIDNFFNRYPFFVAGCTFIWLVVIPLAEEYLKKCKFVSAIDAFRKLRDDPNAQLLDIRDEKNVRFLKSSNLKMFEKEVAQVEFAEDGNEDEFVKKVLGRFKDAPNTVVCVLDSFDGNSMKVAEVLFKNGFKEAYAIRGGVRGQQGWMAIQDSLLPPSVHIRKRVKASKKLNTNGNGAIQQNDSNNNSSLTQDRSSVENQTTDDGHVKSSVEFISEVKTGSVASSSPYPNYPDLKPPSSPTPSKPQ*

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