Glyma18g48190 - SoyBase

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Report for Sequence Feature Glyma18g48190

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57678407
stop:	57682157
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48390	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:19612078-19615363 FORWARD LENGTH=936	SoyBase	E_val: 0	ISS
GO:0000712	GO-bp	Annotation by Michelle Graham. GO Biological Process: resolution of meiotic recombination intermediates	SoyBase	N/A	ISS
GO:0007140	GO-bp	Annotation by Michelle Graham. GO Biological Process: male meiosis	SoyBase	N/A	ISS
GO:0007143	GO-bp	Annotation by Michelle Graham. GO Biological Process: female meiosis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF08631	PFAM	Meiosis protein SPO22/ZIP4 like	JGI		ISS
UniRef100_A5Y6I6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ZIP4/SPO22 n=1 Tax=Arabidopsis thaliana RepID=A5Y6I6_ARATH	SoyBase	E_val: 0	ISS
UniRef100_I1N431	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N431_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g48190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g246600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48190

Limit To All Plant Sequences

>Glyma18g48190.2   sequence type=CDS   gene model=Glyma18g48190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATAGGGTGGCTGGGGGTGGTGGGGAAGGGGGGAGACTGAGAGCTAAGGTGGTTGCTGAGCTTGTGTCGGATGAGAGGGTGGTGGCCCTCTTTGCAGGACAGGATGCTGCTAAGGATAGGGTGGCAATGCATGCTGTTCTGTGGAATTGTGGTGCCGATAATTTTCAATCAAAAGATTATGAGACCAGTGCGGAACTCTTTGAAAAATCAATGCTATATATTCCATATGATGCAGAGAACAGAATACTTCGAGCAAAGGGCTTTAGAGTTTTGTGCCTCTGCTACCTTGGTCTCCTGCAGCTGGATCGCGCTCAAGAATACATTAATGAGGCTGAAAAGCTTGAGCCTAACATTGTCTGTGCTTTTCTTAAGTTCAAAATTTATCTCCAAAAGAATGACCACCAAGGTGCTATTAATCAAATTGAAGCGATGACAACATGCCTTGACTTTCAACCAGATTTTCTCTCACTTTCAGCACATGAAGCTGTTGCATGCCATGCTCTACCTATTGCTGTTGCTTCTCTATCAAGTATGCTAAAGTTCTATGCTTCAGGAAAGTCCATGCCCACAGCAGAAGTAACAGTTGTGCGCACCTTGCTGACAGTCCTCTCTCAAGAGCCGGGTAACGAACAGCAAGTAATAAAATTCCTCAAACACGCCCATACACGAGCATCGGAGATTGGTCCTGATTGCTTCTTTGGAAAAGAGGAAGTTGGAAGACGGGAACGGAATTGGTTTGCTGTGACTTCATGGAACTTTGGGACAAAATCGGGACAGGATAAGAACTATGAATCATCTGCCGTGTTCTTAAAACTGGCATCAGATTTTTATGCTCTAATTGAGGGGTCTGATAATGAGAACAATGTCATGGTTTGCAAATCGTTAGTGCTTTCTGTATCATCAATGATAGCTTCAGAATTTGAAAGGAAGACTTCGATGTCAGAAACTGAAGTCAAGCAAGCTTTATACTTGTTAGATAGAGCAGGGGAGATGCTAAAATCAATTTCAGCCAGGAACTCTGTTAACAGTGACCAAATTAATACCATTGAGCCTGAACTTTTTTTCATATACACTTTCTGCTATTATGATATACAAGGCAGGCTGAATGACTTGGGATCTCAACTTCTCAATGTGAAAAGCTTTGCCAGCTCAAAGGCTTGCAAACCTCACCACCTCCTTCAAATAGGTCTCTCTGCCTCACAGGGACCACGGTTGAATCACGAAGTAGCCTGCTTTGCTTTAAATGAATGCCTCTCATCTTTCCTTTCATCAGCAGCTCCAGATTATCAAAATGTTGCTCTTGTAATGCGCAAGCTTATATCCAATGCCAGCATTCACAAGGGTGATGCAGATGATGATCTTGTATATAGCATGTACAAGCAAGCCTATAGGATAATGGTTGGTTTGAAGGAAGATGAGTATCCGATTGAAGAAGGAAAGTGGCTTGCCATGACTGCATGGAACCGAGCAGCAGTGCCAGTCAGGTTGGGTCAGATTGAAGTGGGGAAGAAATGGATGACTGTGGGCTTAGACATTGCAAAGCATGTCCCAGGCATGGAAGCTTACAAAGAATGCATGGAAGAAGTCCTTGGCAATTTGAAGAAAGAATTTTGA

Predicted protein sequences of Glyma18g48190

Limit To All Plant Sequences

>Glyma18g48190.2   sequence type=predicted peptide   gene model=Glyma18g48190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HRVAGGGGEGGRLRAKVVAELVSDERVVALFAGQDAAKDRVAMHAVLWNCGADNFQSKDYETSAELFEKSMLYIPYDAENRILRAKGFRVLCLCYLGLLQLDRAQEYINEAEKLEPNIVCAFLKFKIYLQKNDHQGAINQIEAMTTCLDFQPDFLSLSAHEAVACHALPIAVASLSSMLKFYASGKSMPTAEVTVVRTLLTVLSQEPGNEQQVIKFLKHAHTRASEIGPDCFFGKEEVGRRERNWFAVTSWNFGTKSGQDKNYESSAVFLKLASDFYALIEGSDNENNVMVCKSLVLSVSSMIASEFERKTSMSETEVKQALYLLDRAGEMLKSISARNSVNSDQINTIEPELFFIYTFCYYDIQGRLNDLGSQLLNVKSFASSKACKPHHLLQIGLSASQGPRLNHEVACFALNECLSSFLSSAAPDYQNVALVMRKLISNASIHKGDADDDLVYSMYKQAYRIMVGLKEDEYPIEEGKWLAMTAWNRAAVPVRLGQIEVGKKWMTVGLDIAKHVPGMEAYKECMEEVLGNLKKEF*

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