Glyma18g48180 - SoyBase

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Report for Sequence Feature Glyma18g48180

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57669099
stop:	57672914
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75670	AT	Annotation by Michelle Graham. TAIR10: DNA-directed RNA polymerases \| chr1:28415378-28416505 REVERSE LENGTH=196	SoyBase	E_val: 4.00E-78	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
KOG4134	KOG	DNA-dependent RNA polymerase I	JGI		ISS
UniRef100_A2Q5X5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid-binding, OB-fold n=1 Tax=Medicago truncatula RepID=A2Q5X5_MEDTR	SoyBase	E_val: 5.00E-103	ISS
UniRef100_C6T3P4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T3P4_SOYBN	SoyBase	E_val: 8.00E-167	ISS

Expression Patterns of Glyma18g48180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48180

Paralog	Evidence	Comments
Glyma09g38210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g246500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48180

Limit To All Plant Sequences

>Glyma18g48180.2   sequence type=transcript   gene model=Glyma18g48180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCCCGCAGTTTCTTTCTTCGTCTGTTCTTGGGCAAACTGGAGTAATCGCGAATGGAGGGGCTCAAGGTCTCCAAAGCGAACTTAACAGTATACATTCACCCTTCCAAAAGTAACCAAGTTTCCCAAGCCGTTCTCCGCCAACTCAGCTCTTTGCTTTTCACGTTCAGCGAAATCTTCGACGGCGTCGTTTTGGCCTACGATGTCAATTCCTTCGACACGTGCGCAAAGATCCTCTCCGGCGTTCACCCTTACTTCGGCGTCAAACTCAAGGTCAATCTGTTGCTCTTTTCTCCCAAGCCAAACATGCTCTTAGAAGGGAAGGTGGTTAAGGTTACGCAAGAGTCCATTCACGTTGTTGTGCTTGGCTTTTCCTCTGCGATTATATCTGAGAAAGATATCAGGGAAGAGTTCGTGTGCAAAACGAAACGAGGGCAAGAGGTGTATGTGAGCAGGTCTCACAAGCGGCATGTGATAAAGGTCGGGACCATGATACGGTTTTTAGTCAAGAGTTTTGATGAAGAAATACTTCATGTTTATGGATCTCTGGTTCCTGATCACACAGGCAGCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATGCTGTGGATGGGGAATTGTCAACGTTGAACATTGGCCAAAAGAGCAAAAAATCAAAGAAGCAAAAGCACCAGGAGGAATCTTGAATGTACCTTGGACATTGTCCACAGGGAAAACAAATTGGCGTGTCTATATTACCAAGGGGATGCCTTCAGCATTTAGATTTCAAAAGCATTCTCTATGTTGCCTTGGAGATCGGTGCACTTGTTTTCATTGAGATCCTAATTCTTTCAGAAACTTTATGATGATAATTTACTGTATGATCAAGAAGCTTAGGCAGGTTTTTTTGGGGAGGGTGCGGCAAGTGTAAAAAAAAAGCCTTGGTGCATTTTCAGTTTAGGAATTACAGGTTTGCAGTCTTTTCCTAGAGTCCTTTAGGAAGTGAGAACTATTCATGTATATCACTGAGCCCAGCCCCCCCATAATTAGAAAGGATGGTGGACTACTGTGTATGAAAAGGTTGTTTTTTTTTTTTGGTTTGATCACTTCTGATGTTATATGCTGAAATGATCTTCAAACTTTCCTCTATTGGTTTGTAGATTACTATGTTCTCTTTTGTGACAATTTGACTAGCTAAATGTTGATAGCCCTTCTCTCCTTAAATCCGGTGAGCTTCAATCACATGATTTGGAGCATATGAAGTCACAAATTC

>Glyma18g48180.3   sequence type=transcript   gene model=Glyma18g48180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCCCGCAGTTTCTTTCTTCGTCTGTTCTTGGGCAAACTGGAGTAATCGCGAATGGAGGGGCTCAAGGTCTCCAAAGCGAACTTAACAGTATACATTCACCCTTCCAAAAGTAACCAAGTTTCCCAAGCCGTTCTCCGCCAACTCAGCTCTTTGCTTTTCACGTTCAGCGAAATCTTCGACGGCGTCGTTTTGGCCTACGATGTCAATTCCTTCGACACGTGCGCAAAGATCCTCTCCGGCGTTCACCCTTACTTCGGCGTCAAACTCAAGGTCAATCTGTTGCTCTTTTCTCCCAAGCCAAACATGCTCTTAGAAGGGAAGGTGGTTAAGGTTACGCAAGAGTCCATTCACGTTGTTGTGCTTGGCTTTTCCTCTGCGATTATATCTGAGAAAGATATCAGGGAAGAGTTCGTGTGCAAAACGAAACGAGGGCAAGAGGTGTATGTGAGCAGGTCTCACAAGCGGCATGTGATAAAGGTCGGGACCATGATACGGTTTTTAGTCAAGAGTTTTGATGAAGAAATACTTCATGTTTATGGATCTCTGGTTCCTGATCACACAGGCAGCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGTTTTTCTCTTATAATGTATTTGTAGAGTTAAAAGAATATTTTTTTTAAAGTATATACTTTCATGTTTAGCTGTCTCATCAAACTTACAGGAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATGCTGTGGATGGGGAATTGTCAACGTTGAACATTGGCCAAAAGAGCAAAAAATCAAAGAAGCAAAAGCACCAGGAGGAATCTTGAATGTACCTTGGACATTGTCCACAGGACAGGGAAAACAAATTGGCGTGTCTATATTACCAAGGGGATGCCTTCAGCATTTAGATTTCAAAAGCATTCTCTATGTTGCCTTGGAGATCGGTGCACTTGTTTTCATTGAGATCCTAATTCTTTCAGAAACTTTATGATGATAATTTACTGTATGATCAAGAAGCTTAGGCAGGTTTTTTTGGGGAGGGTGCGGCAAGTGTAAAAAAAAAGCCTTGGTGCATTTTCAGTTTAGGAATTACAGGTTTGCAGTCTTTTCCTAGAGTCCTTTAGGAAGTGAGAACTATTCATGTATATCACTGAGCCCAGCCCCCCCATAATTAGAAAGGATGGTGGACTACTGTGTATGAAAAGGTTGTTTTTTTTTTTTGGTTTGATCACTTCTGATGTTATATGCTGAAATGATCTTCAAACTTTCCTCTATTGGTTTGTAGATTACTATGTTCTCTTTTGTGACAATTTGACTAGCTAAATGTTGATAGCCCTTCTCTCCTTAAATCCGGTGAGCTTCAATCACATGATTTGGAGCATATGAAGTCACAAATTC

Coding sequences of Glyma18g48180

Limit To All Plant Sequences

>Glyma18g48180.1   sequence type=CDS   gene model=Glyma18g48180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGGCTCAAGGTCTCCAAAGCGAACTTAACAGTATACATTCACCCTTCCAAAAGTAACCAAGTTTCCCAAGCCGTTCTCCGCCAACTCAGCTCTTTGCTTTTCACGTTCAGCGAAATCTTCGACGGCGTCGTTTTGGCCTACGATGTCAATTCCTTCGACACGTGCGCAAAGATCCTCTCCGGCGTTCACCCTTACTTCGGCGTCAAACTCAAGGTCAATCTGTTGCTCTTTTCTCCCAAGCCAAACATGCTCTTAGAAGGGAAGGTGGTTAAGGTTACGCAAGAGTCCATTCACGTTGTTGTGCTTGGCTTTTCCTCTGCGATTATATCTGAGAAAGATATCAGGGAAGAGTTCGTGTGCAAAACGAAACGAGGGCAAGAGGTGTATGTGAGCAGGTCTCACAAGCGGCATGTGATAAAGGTCGGGACCATGATACGGTTTTTAGTCAAGAGTTTTGATGAAGAAATACTTCATGTTTATGGATCTCTGGTTCCTGATCACACAGGCAGCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATGCTGTGGATGGGGAATTGTCAACGTTGAACATTGGCCAAAAGAGCAAAAAATCAAAGAAGCAAAAGCACCAGGAGGAATCTTGA

>Glyma18g48180.2   sequence type=CDS   gene model=Glyma18g48180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGGCTCAAGGTCTCCAAAGCGAACTTAACAGTATACATTCACCCTTCCAAAAGTAACCAAGTTTCCCAAGCCGTTCTCCGCCAACTCAGCTCTTTGCTTTTCACGTTCAGCGAAATCTTCGACGGCGTCGTTTTGGCCTACGATGTCAATTCCTTCGACACGTGCGCAAAGATCCTCTCCGGCGTTCACCCTTACTTCGGCGTCAAACTCAAGGTCAATCTGTTGCTCTTTTCTCCCAAGCCAAACATGCTCTTAGAAGGGAAGGTGGTTAAGGTTACGCAAGAGTCCATTCACGTTGTTGTGCTTGGCTTTTCCTCTGCGATTATATCTGAGAAAGATATCAGGGAAGAGTTCGTGTGCAAAACGAAACGAGGGCAAGAGGTGTATGTGAGCAGGTCTCACAAGCGGCATGTGATAAAGGTCGGGACCATGATACGGTTTTTAGTCAAGAGTTTTGATGAAGAAATACTTCATGTTTATGGATCTCTGGTTCCTGATCACACAGGCAGCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATGCTGTGGATGGGGAATTGTCAACGTTGAACATTGGCCAAAAGAGCAAAAAATCAAAGAAGCAAAAGCACCAGGAGGAATCTTGA

>Glyma18g48180.3   sequence type=CDS   gene model=Glyma18g48180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGGCTCAAGGTCTCCAAAGCGAACTTAACAGTATACATTCACCCTTCCAAAAGTAACCAAGTTTCCCAAGCCGTTCTCCGCCAACTCAGCTCTTTGCTTTTCACGTTCAGCGAAATCTTCGACGGCGTCGTTTTGGCCTACGATGTCAATTCCTTCGACACGTGCGCAAAGATCCTCTCCGGCGTTCACCCTTACTTCGGCGTCAAACTCAAGGTCAATCTGTTGCTCTTTTCTCCCAAGCCAAACATGCTCTTAGAAGGGAAGGTGGTTAAGGTTACGCAAGAGTCCATTCACGTTGTTGTGCTTGGCTTTTCCTCTGCGATTATATCTGAGAAAGATATCAGGGAAGAGTTCGTGTGCAAAACGAAACGAGGGCAAGAGGTGTATGTGAGCAGGTCTCACAAGCGGCATGTGATAAAGGTCGGGACCATGATACGGTTTTTAGTCAAGAGTTTTGATGAAGAAATACTTCATGTTTATGGATCTCTGGTTCCTGATCACACAGGCAGCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGTTTTTCTCTTATAATGTATTTGTAGAGTTAAAAGAATATTTTTTTTAA

Predicted protein sequences of Glyma18g48180

Limit To All Plant Sequences

>Glyma18g48180.1   sequence type=predicted peptide   gene model=Glyma18g48180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGLKVSKANLTVYIHPSKSNQVSQAVLRQLSSLLFTFSEIFDGVVLAYDVNSFDTCAKILSGVHPYFGVKLKVNLLLFSPKPNMLLEGKVVKVTQESIHVVVLGFSSAIISEKDIREEFVCKTKRGQEVYVSRSHKRHVIKVGTMIRFLVKSFDEEILHVYGSLVPDHTGSIYWLDKNLEVDSHSDRSEKKRRIVPERIMLEQDAVDGELSTLNIGQKSKKSKKQKHQEES*

>Glyma18g48180.2   sequence type=predicted peptide   gene model=Glyma18g48180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGLKVSKANLTVYIHPSKSNQVSQAVLRQLSSLLFTFSEIFDGVVLAYDVNSFDTCAKILSGVHPYFGVKLKVNLLLFSPKPNMLLEGKVVKVTQESIHVVVLGFSSAIISEKDIREEFVCKTKRGQEVYVSRSHKRHVIKVGTMIRFLVKSFDEEILHVYGSLVPDHTGSIYWLDKNLEVDSHSDRSEKKRRIVPERIMLEQDAVDGELSTLNIGQKSKKSKKQKHQEES*

>Glyma18g48180.3   sequence type=predicted peptide   gene model=Glyma18g48180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGLKVSKANLTVYIHPSKSNQVSQAVLRQLSSLLFTFSEIFDGVVLAYDVNSFDTCAKILSGVHPYFGVKLKVNLLLFSPKPNMLLEGKVVKVTQESIHVVVLGFSSAIISEKDIREEFVCKTKRGQEVYVSRSHKRHVIKVGTMIRFLVKSFDEEILHVYGSLVPDHTGSIYWLDKNLEVDSHSDRFFSYNVFVELKEYFF*

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