Glyma18g48170 - SoyBase

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Report for Sequence Feature Glyma18g48170

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57660090
stop:	57663349
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48380	AT	Annotation by Michelle Graham. TAIR10: BAK1-interacting receptor-like kinase 1 \| chr5:19604584-19606532 REVERSE LENGTH=620	SoyBase	E_val: 0	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0060548	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cell death	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0033612	GO-mf	Annotation by Michelle Graham. GO Molecular Function: receptor serine/threonine kinase binding	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF477	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_A2Q5X8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probably inactive leucine-rich repeat receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=A2Q5X8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N429	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N429_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48170

Paralog	Evidence	Comments
Glyma09g38220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g246400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48170

Limit To All Plant Sequences

>Glyma18g48170.1   sequence type=CDS   gene model=Glyma18g48170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGTTTATGGGTGGCCAAATTTTCGGTGCTGGTGTTATTATTGTTAGTTTCTTTCTGCTGATCCTCTGTGGCATGGTTTGTGGGACTGACAGTGATATATTCTGCTTGAAAAGTGTAAAGAGAACACTTGACGACCCCTACAATTATTTGCAATCCTGGAATTTCAATAACAATACAGAAGGGTATATATGCAAGTTTACTGGGGTTGAGTGTTGGCACCCTGATGAAAACAAGGTCTTGAATCTCAAACTGTCAAACATGGGACTCAAGGGCCCCTTCCCTCGCGGCATTCAGAATTGTTCAAGCATGACAGGATTAGATTTTTCGCTTAACAGACTCTCTAAAACCATTCCGGCCGATATATCCACACTTCTTACATTTGTGACAACCCTTGATCTTTCTTCAAATGATTTTACAGGGGAGATACCTGCATCCCTTTCAAATTGTACCTATCTTAATACAATTAGACTTGACCAAAACCAACTCACTGGTCAAATTCCTGCTAACTTGAGTCAGCTCCCGCGGCTTAAGTTGTTTAGTGTTGCCAATAATCTTTTGACAGGGCAAGTTCCAATCTTTGCAAATGGTGTAGCTAGTGCCAATAGTTATGCAAATAATTCAGGTCTGTGTGGTAAACCCTTATTGGATGCTTGCCAGGCCAAGGCTTCGAAGAGTAACACAGCTGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACTGTTGCAGCATTAGGTTTGGGCATTGGAATGTTCTTCTACGTGCGCCGTATTTCTTATAGGAAGAAGGAAGAGGACCCTGAAGGAAACAAGTGGGCAAGAAGTCTAAAGGGAACTAAAACAATAAAGGTTTCTATGTTTGAGAAGTCAATTTCAAAAATGAACTTGAATGATCTCATGAAGGCTACTGATAACTTCGGCAAAAGCAATATTATTGGGACTGGAAGATCAGGAACTGTTTACAAAGCTGTCCTTCATGATGGCACATCACTCATGGTTAAGAGATTACAGGAATCTCAACATTCAGAGAAAGAATTTCTGTCTGAGATGAATATACTAGGTTCTGTCAAACATCGTAACTTGGTTCCGCTTTTAGGTTTTTGCGTGGCTAAAAAGGAGAGGTTTTTGGTCTATAAAAATATGCCAAATGGTACCCTCCATGATCAACTACACCCTGATGCTGGTGCATGCACCATGGATTGGCCTCTAAGGCTCAAAATTGCAATTGGAGCAGCCAAGGGATTAGCATGGCTTCATCATAGCTGCAATCCCCGCATTATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCTGATTTTGAGCCCAAAATTTCTGATTTTGGCCTTGCTAGATTGATGAACCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTAGGTTATGTTGCTCCTGAATATACAAAAACTTTGGTGGCTACTCCTAAAGGGGATATTTATAGCTTCGGGACTGTGCTTCTTGAGTTGGTGACAGGTGAAAGACCTACCCATGTGTCTAAAGCTCCAGAAACTTTTAAAGGAAATTTGGTAGAATGGATTCAACAGCAATCTAGCAATGCAAAACTCCATGAAGCCATTGATGAATCACTAGTTGGGAAGGGTGTAGACCAGGAGCTTTTCCAATTTCTGAAGGTTGCATGTAACTGTGTTACAGCAATGCCAAAGGAGAGGCCTACCATGTTTGAAGTATACCAGCTTCTAAGAGCCATTGGGATTAATTATAATTTCACAACTGAGGATGAGATCATGTTGCCTATGGACACTGGTGATGCTGATAACTTAGAAGAACTTATTGTAGCTCGAGAGGGACATGATTGA

Predicted protein sequences of Glyma18g48170

Limit To All Plant Sequences

>Glyma18g48170.1   sequence type=predicted peptide   gene model=Glyma18g48170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMFMGGQIFGAGVIIVSFFLLILCGMVCGTDSDIFCLKSVKRTLDDPYNYLQSWNFNNNTEGYICKFTGVECWHPDENKVLNLKLSNMGLKGPFPRGIQNCSSMTGLDFSLNRLSKTIPADISTLLTFVTTLDLSSNDFTGEIPASLSNCTYLNTIRLDQNQLTGQIPANLSQLPRLKLFSVANNLLTGQVPIFANGVASANSYANNSGLCGKPLLDACQAKASKSNTAVIAGAAVGGVTVAALGLGIGMFFYVRRISYRKKEEDPEGNKWARSLKGTKTIKVSMFEKSISKMNLNDLMKATDNFGKSNIIGTGRSGTVYKAVLHDGTSLMVKRLQESQHSEKEFLSEMNILGSVKHRNLVPLLGFCVAKKERFLVYKNMPNGTLHDQLHPDAGACTMDWPLRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTKTLVATPKGDIYSFGTVLLELVTGERPTHVSKAPETFKGNLVEWIQQQSSNAKLHEAIDESLVGKGVDQELFQFLKVACNCVTAMPKERPTMFEVYQLLRAIGINYNFTTEDEIMLPMDTGDADNLEELIVAREGHD*

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