SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g48143

Feature Type:gene_model
Chromosome:Gm18
Start:57641770
stop:57645999
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g48143
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37850AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328 SoyBaseE_val: 8.00E-36ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR23042Panther CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS JGI ISS
PTHR23042:SF25Panther NAI1, DNA BINDING / TRANSCRIPTION FACTOR JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7LCK7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH25 n=1 Tax=Medicago truncatula RepID=G7LCK7_MEDTR SoyBaseE_val: 2.00E-47ISS
UniRef100_I1N427UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N427_SOYBN SoyBaseE_val: 5.00E-103ISS

Expression Patterns of Glyma18g48143
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g48143 not represented in the dataset
Glyma18g48143 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48143
ParalogEvidenceComments
Glyma09g38241 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48143 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g246200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g48143
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g48143
>Glyma18g48143.1   sequence type=CDS   gene model=Glyma18g48143   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACGGATGATGATGATTTATTCATTAATCAAAGCCACGTGATCTCTTTCAATGAAGCAAAGTCCCCCAAAGGCATGATTTTTCAGCAACAAGTTTTTTCTCCCAAAAGTAAACCCTCTTCCTCTTCTTCTTCTTCTTCTTCTTTCCTTCAAAGCAACTTGAAATCTTGCTCATCATTTTCAACGGGTGGTTATGTATTGTCTTTTGATAATAACCATATTGTTGAACCACGTTACCCTCAAAACCCCTTCTCTAAAAGCGTGGCACAAAGCCATTGCGTTGAGCCAAAGGCGTTCCCACGAACAAGGCCACGAGTTCACATATTGGCCGAGAGAAAAAGGAGAGAGGAATTGAATAAGAGCATCGTGGCACTTTCAGCCACCATTCTTGGGTTTAAAAAGACAGACAAGGCAAATGTAGTACGTGAAGCTGTCAAATATGTGAAACAACTTGAAGAACGTGTGAACGAGCTAGAAAATCAAAAGAGAAAGGAAGGTGTGAATTCAATAATACTCACCAAGAAAACGCCACTCTCCATAAATAATATTGATCAAGCCATCACTCATGGATGTGTGGATGTGGAAGAAGAAATCCTCGAGCTGAAAGTAACTGTTTTAGATAAGGAATTGCTCATTGGAATTTATTCTGAGAAACAAAGGCAGACAATGCTCAAAATATTGTCATTGCTTGATGATCTCCATCTTTCTATAACCCCTCTTTCTATAACCCCTACTAGCGTATTGCCATTTGGAACTTCCACTCTTAAAATTACCATTATCGCTCAGATGGATGACGAATATAACATGATAATTCATGATCTAGTAAAAGCACTGCGGCAACGCATATTGAAGTCACAGGATATGCAAAAGTGA
Predicted protein sequences of Glyma18g48143
>Glyma18g48143.1   sequence type=predicted peptide   gene model=Glyma18g48143   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ETDDDDLFINQSHVISFNEAKSPKGMIFQQQVFSPKSKPSSSSSSSSSFLQSNLKSCSSFSTGGYVLSFDNNHIVEPRYPQNPFSKSVAQSHCVEPKAFPRTRPRVHILAERKRREELNKSIVALSATILGFKKTDKANVVREAVKYVKQLEERVNELENQKRKEGVNSIILTKKTPLSINNIDQAITHGCVDVEEEILELKVTVLDKELLIGIYSEKQRQTMLKILSLLDDLHLSITPLSITPTSVLPFGTSTLKITIIAQMDDEYNMIIHDLVKALRQRILKSQDMQK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo