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Report for Sequence Feature Glyma18g48126

Feature Type:gene_model
Chromosome:Gm18
Start:57632977
stop:57637038
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g48126
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37850AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328 SoyBaseE_val: 4.00E-36ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR23042Panther CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS JGI ISS
PTHR23042:SF25Panther NAI1, DNA BINDING / TRANSCRIPTION FACTOR JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7KSG4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor NAI1 n=2 Tax=Medicago truncatula RepID=G7KSG4_MEDTR SoyBaseE_val: 2.00E-82ISS
UniRef100_UPI000233EE1BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EE1B related cluster n=1 Tax=unknown RepID=UPI000233EE1B SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g48126
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g48126 not represented in the dataset
Glyma18g48126 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48126
ParalogEvidenceComments
Glyma09g38250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48126 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g246000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g48126
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g48126
>Glyma18g48126.1   sequence type=CDS   gene model=Glyma18g48126   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATTCGTTGGAGAATTGGATTTCACTGTTGGAAATGGAAGAATATCATGATGGGTCATTTGATGAGGAAGAGTTCCTAAGAGAGATCCTTAAGGAGGAGCAGCAGCCAGAAAATTTGTGGCCTCAAAGAGATCAAAAGCTCTCCAACACCAGCCCCACTGTGTCCTTTGATGAGGCAATTAGCTTTTGTGGGAGTGGCACTCTACATAAAAGCAACAGCTCCAACTCCATCAAGTCTTTGAAAAGATCATCATCAAGTGTCTCACCAGCCACCACTACATACCTTCTTTCTTTTGATACCTCAAGTGCTAAACCAATCACACTTAAACCTTCCCCTAAGCTTGATTTGGCACTTGGATCATCCAATAAAAGGAGTACTAGTACTGTAACTGTGGTGAAAGATGGGTGTGAATTTGAACCATTGATGATGCCCCAAAGCCAAGCAAGGAAGAAGGTTAGAAGGTCATGTGAGACACAGCATCACATTATTGCTGAGAGGAAAAGGAGACAGGAACTGACAGGGAGCATTATAGCACTTGCAGCAACTATTCCTGGGCTCAAGAGGATGGACAAGGCTTATGTGCTTCGTGAAGCTGTCAATTACACAAAACAACTTCAAGAGCGAGTTAAAGAGTTGGAAAATCAAAACAAAGTAGATTCAGCAACATTCATAAGGAAATCTCAAGCTTCCTCACATTGTGAAACGAACAAAGAAATATCACTATTTGAGGTTGAAGCAAGAGTCTTAGATGAGGAAGTACTCATTGGAATCCATTGTGAGAAACAAAAGGACATAGTGTTCAAAATACATGCCTTGCTTGGAAAGCTCCATCTCTCTACAACCAGTAGCACCGTACTGCCATTTGGGACTTCTACTCTTATAATCAACATTATTGCTCAGGAAACAGCCATGACCATGCATGACCTAGTGAAAAAACTGAGAGATTATAATCGGAGGTGTATGACGAGCAATAGCAATTAG
Predicted protein sequences of Glyma18g48126
>Glyma18g48126.1   sequence type=predicted peptide   gene model=Glyma18g48126   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDSLENWISLLEMEEYHDGSFDEEEFLREILKEEQQPENLWPQRDQKLSNTSPTVSFDEAISFCGSGTLHKSNSSNSIKSLKRSSSSVSPATTTYLLSFDTSSAKPITLKPSPKLDLALGSSNKRSTSTVTVVKDGCEFEPLMMPQSQARKKVRRSCETQHHIIAERKRRQELTGSIIALAATIPGLKRMDKAYVLREAVNYTKQLQERVKELENQNKVDSATFIRKSQASSHCETNKEISLFEVEARVLDEEVLIGIHCEKQKDIVFKIHALLGKLHLSTTSSTVLPFGTSTLIINIIAQETAMTMHDLVKKLRDYNRRCMTSNSN*






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