Glyma18g48100 - SoyBase

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Report for Sequence Feature Glyma18g48100

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57618116
stop:	57621756
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G44750	AT	Annotation by Michelle Graham. TAIR10: purine permease 11 \| chr1:16893825-16895168 FORWARD LENGTH=367	SoyBase	E_val: 2.00E-161	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0015931	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005345	GO-mf	Annotation by Michelle Graham. GO Molecular Function: purine nucleobase transmembrane transporter activity	SoyBase	N/A	ISS
KOG1441	KOG	Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter	JGI		ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_B9SKH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATPUP11, putative n=1 Tax=Ricinus communis RepID=B9SKH5_RICCO	SoyBase	E_val: 1.00E-174	ISS
UniRef100_I1N423	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N423_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48100

Paralog	Evidence	Comments
Glyma09g38270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g245800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48100

Limit To All Plant Sequences

>Glyma18g48100.2   sequence type=transcript   gene model=Glyma18g48100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAAGATATGGGTTTTCTTTAAATCATTTATTTTGCGTGTTATCAGTTTCATGATTTTTTTTGTTTTTAATTGAGTCATTAAGATTTAAGGGAAACGGGTATGCAGATTTTTTCTGAATTCTGATTGTTCCCAAAGAGTTTACCTTTAGCGAGGGTTGTATGTAAAATATTTGTTTTAGAATTAGTTATATAAAATTAAATTTTCTATCTTTTAAGATTTTATTTTTAGTAGATCAATACAGTTTGTTGCATAATTTGTTATGTTTCCAATGGTTATATATGCCTATATACCTCTCCTCTCTAGCAAAAGTACATAAACCCAAAAAAAACAATTTACGTCCTTTTTTTTCTACTTATTATCTTTTTGAGAGCAACAACAAGGTTTGAAGATTCTTTCACTCGATACCAAAGGATTATCGTATAATGGGAGAGGAACACAATAGTGAAGAACCAATGATCGTGCCTGGAACAATGTCTGAATTAGCATTTAATAAATATAAGCGATGGCAATGGTGGTGTCTTGTGACACTCAGCATAGCCTTTCTTATAGTGGGCCAATCTGCTGCTGTTATCCTTGGAAGATTTTATTATGATCAGGGTGGAAATAGTAAATGGATGGCTACTCTTGTTCAAACTGCTGCCTTCCCAATCTTGTTCATTCCATTATTTACAATTCCTTCACCTCCAGAGGCTTCAACTTCTGCTTCATCTTCCATCAAAATTATTCTTTTGATATATTTTGTTCTTGGAATCTTAATTGCTGCTGACAATATGATGTACTCCACTGGACTCTTATACCTCTCAGCTTCTACCTATTCCCTGATTTCTGCATCACAGTTGGCTTTCAATGCAGTTTTCTCATATTTTATCAATTCTCAAAAGTTCACTGCTTTGATTATAAACTCTACAGTGGTTCTCACTTTATCTGCTGCACTCCTTGCGGTTAATGAAGACTCAGATGAACCATCTGGTCTCTCCATGGGAAAGTACATTATTGGTTTCCTATGTACCCTTGGAGCTTCTGCAGTGTACTCTCTTTTGCTTTCCCTCATGCAACTAACCTTTGAGAAGGTTCTGAAGAAGGAAACATTTTCTGTTGTTTTGCAAATGCAAATCTACACGTCACTCGTAGCCACTTGTGCTTCCGTCATAGGCCTATTTGCAAGTGGGGAGTGGCATACTTTGCATGGAGAAATGAAAGGTTTTCAGAAAGGACATGTTGCTTATGTAATGACTTTGGTTTGGACAGCAATAGCCTGGCAGGTATGCTCTGTTGGTGTTGTTGGCTTGATATTCCTAGTGTCTTCTCTCTACTCCAATGTTATAAGCACGGTCTCTTTAGCCGTAACTCCTATTGCTGCTGTTATAGTTTTTCATGATAAGATGAACGGGGTGAAGATAATTTCTATGCTTTTGGCTCTTTGGGGTTTTGCCTCTTATATCTATCAGAATTATCTTGATGATTCAAAGGCAAGACATGCACAAGCTGTTGCTAAGTCTCACAATGATTCTCCTTGTTGAGAATATTCAATTTGGTCATACCTTTGCTGAAGTACCCTTTTTTTCTTTTTAGCTTTAAATCTTTCAGTACAGCATTTGTTAGCTTTAGATTTTTTTTTCCTTCAGTCTCACGGGACTAGTGAGATAGTATACTTATGAAGTTATTGGTCATTCTACATTATTGCTCTCTCATTTAAGAAATGAAAAGATTGTTGGTGTCTCGGACTTGTTGGAAGTCTCTGATCTTCTTATTTCAATTTTTTTTTGTTGGTGTATGAGGCTTTTGTGAATTGTAATAAGTTGATTAATTTCCGTCAGTTTTACTGATGATTAATCTTTG

Coding sequences of Glyma18g48100

Limit To All Plant Sequences

>Glyma18g48100.1   sequence type=CDS   gene model=Glyma18g48100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGATAGTGAAGAACCAATGATCGTGCCTGGAACAATGTCTGAATTAGCATTTAATAAATATAAGCGATGGCAATGGTGGTGTCTTGTGACACTCAGCATAGCCTTTCTTATAGTGGGCCAATCTGCTGCTGTTATCCTTGGAAGATTTTATTATGATCAGGGTGGAAATAGTAAATGGATGGCTACTCTTGTTCAAACTGCTGCCTTCCCAATCTTGTTCATTCCATTATTTACAATTCCTTCACCTCCAGAGGCTTCAACTTCTGCTTCATCTTCCATCAAAATTATTCTTTTGATATATTTTGTTCTTGGAATCTTAATTGCTGCTGACAATATGATGTACTCCACTGGACTCTTATACCTCTCAGCTTCTACCTATTCCCTGATTTCTGCATCACAGTTGGCTTTCAATGCAGTTTTCTCATATTTTATCAATTCTCAAAAGTTCACTGCTTTGATTATAAACTCTACAGTGGTTCTCACTTTATCTGCTGCACTCCTTGCGGTTAATGAAGACTCAGATGAACCATCTGGTCTCTCCATGGGAAAGTACATTATTGGTTTCCTATGTACCCTTGGAGCTTCTGCAGTGTACTCTCTTTTGCTTTCCCTCATGCAACTAACCTTTGAGAAGGTTCTGAAGAAGGAAACATTTTCTGTTGTTTTGCAAATGCAAATCTACACGTCACTCGTAGCCACTTGTGCTTCCGTCATAGGCCTATTTGCAAGTGGGGAGTGGCATACTTTGCATGGAGAAATGAAAGGTTTTCAGAAAGGACATGTTGCTTATGTAATGACTTTGGTTTGGACAGCAATAGCCTGGCAGGTATGCTCTGTTGGTGTTGTTGGCTTGATATTCCTAGTGTCTTCTCTCTACTCCAATGTTATAAGCACGGTCTCTTTAGCCGTAACTCCTATTGCTGCTGTTATAGTTTTTCATGATAAGATGAACGGGGTGAAGATAATTTCTATGCTTTTGGCTCTTTGGGGTTTTGCCTCTTATATCTATCAGAATTATCTTGATGATTCAAAGGCAAGACATGCACAAGCTGTTGCTAAGTCTCACAATGATTCTCCTTGTTGA

>Glyma18g48100.2   sequence type=CDS   gene model=Glyma18g48100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGGAACACAATAGTGAAGAACCAATGATCGTGCCTGGAACAATGTCTGAATTAGCATTTAATAAATATAAGCGATGGCAATGGTGGTGTCTTGTGACACTCAGCATAGCCTTTCTTATAGTGGGCCAATCTGCTGCTGTTATCCTTGGAAGATTTTATTATGATCAGGGTGGAAATAGTAAATGGATGGCTACTCTTGTTCAAACTGCTGCCTTCCCAATCTTGTTCATTCCATTATTTACAATTCCTTCACCTCCAGAGGCTTCAACTTCTGCTTCATCTTCCATCAAAATTATTCTTTTGATATATTTTGTTCTTGGAATCTTAATTGCTGCTGACAATATGATGTACTCCACTGGACTCTTATACCTCTCAGCTTCTACCTATTCCCTGATTTCTGCATCACAGTTGGCTTTCAATGCAGTTTTCTCATATTTTATCAATTCTCAAAAGTTCACTGCTTTGATTATAAACTCTACAGTGGTTCTCACTTTATCTGCTGCACTCCTTGCGGTTAATGAAGACTCAGATGAACCATCTGGTCTCTCCATGGGAAAGTACATTATTGGTTTCCTATGTACCCTTGGAGCTTCTGCAGTGTACTCTCTTTTGCTTTCCCTCATGCAACTAACCTTTGAGAAGGTTCTGAAGAAGGAAACATTTTCTGTTGTTTTGCAAATGCAAATCTACACGTCACTCGTAGCCACTTGTGCTTCCGTCATAGGCCTATTTGCAAGTGGGGAGTGGCATACTTTGCATGGAGAAATGAAAGGTTTTCAGAAAGGACATGTTGCTTATGTAATGACTTTGGTTTGGACAGCAATAGCCTGGCAGGTATGCTCTGTTGGTGTTGTTGGCTTGATATTCCTAGTGTCTTCTCTCTACTCCAATGTTATAAGCACGGTCTCTTTAGCCGTAACTCCTATTGCTGCTGTTATAGTTTTTCATGATAAGATGAACGGGGTGAAGATAATTTCTATGCTTTTGGCTCTTTGGGGTTTTGCCTCTTATATCTATCAGAATTATCTTGATGATTCAAAGGCAAGACATGCACAAGCTGTTGCTAAGTCTCACAATGATTCTCCTTGTTGA

Predicted protein sequences of Glyma18g48100

Limit To All Plant Sequences

>Glyma18g48100.1   sequence type=predicted peptide   gene model=Glyma18g48100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDSEEPMIVPGTMSELAFNKYKRWQWWCLVTLSIAFLIVGQSAAVILGRFYYDQGGNSKWMATLVQTAAFPILFIPLFTIPSPPEASTSASSSIKIILLIYFVLGILIAADNMMYSTGLLYLSASTYSLISASQLAFNAVFSYFINSQKFTALIINSTVVLTLSAALLAVNEDSDEPSGLSMGKYIIGFLCTLGASAVYSLLLSLMQLTFEKVLKKETFSVVLQMQIYTSLVATCASVIGLFASGEWHTLHGEMKGFQKGHVAYVMTLVWTAIAWQVCSVGVVGLIFLVSSLYSNVISTVSLAVTPIAAVIVFHDKMNGVKIISMLLALWGFASYIYQNYLDDSKARHAQAVAKSHNDSPC*

>Glyma18g48100.2   sequence type=predicted peptide   gene model=Glyma18g48100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEEHNSEEPMIVPGTMSELAFNKYKRWQWWCLVTLSIAFLIVGQSAAVILGRFYYDQGGNSKWMATLVQTAAFPILFIPLFTIPSPPEASTSASSSIKIILLIYFVLGILIAADNMMYSTGLLYLSASTYSLISASQLAFNAVFSYFINSQKFTALIINSTVVLTLSAALLAVNEDSDEPSGLSMGKYIIGFLCTLGASAVYSLLLSLMQLTFEKVLKKETFSVVLQMQIYTSLVATCASVIGLFASGEWHTLHGEMKGFQKGHVAYVMTLVWTAIAWQVCSVGVVGLIFLVSSLYSNVISTVSLAVTPIAAVIVFHDKMNGVKIISMLLALWGFASYIYQNYLDDSKARHAQAVAKSHNDSPC*

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