Glyma18g48060 - SoyBase

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Report for Sequence Feature Glyma18g48060

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57577619
stop:	57579627
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7KTC3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RGLG2 n=1 Tax=Medicago truncatula RepID=G7KTC3_MEDTR	SoyBase	E_val: 2.00E-10	ISS
UniRef100_I1N419	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N419_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g48060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g245400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48060

Limit To All Plant Sequences

>Glyma18g48060.3   sequence type=transcript   gene model=Glyma18g48060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATAAAACAATGATATTTGTTTGTTGTCAAGCCCCGCTTCCTTCTCTGTACGCAAGCACTCTACTGATGCCCTTCACTCTTCACTTCTCATTCTCTCTCTTAATATCTTCCTTTCTCTTTCTCTTTCTAGTTTTTCTCTTTCACTCTCTTCTCTTTCGTTTTTCTCTGCCTTTGAATTTGCCAGCGACGAAGCATCGAGAACCTCGGAAGAGTAAAACGAGTCAAACATGTCGCCCAACAACGTGGAATCTGGGACAACGGATGATACAGAGGTAGTAGGACAACAACAACGTCATAGTCCAATACATGATATTGCCTTGCAGATACAGACACAGGCTCCGGTGGAAACCCATGGGCTATACCAAACAAATGATGTTCATACGCGTCCGATGGGCATGGCCGTGATAGACGCGATCCTCCCACCACAAAATCCTTCTAGCTTAATGAGCTTCAAGGAAGCTGTAGTGTCAAATGCAAGGAGAATTCCCCTTAAGACCCTAGTTACTTTGCTCCTTGTTTGTGTTGGTATCATGGATCATCTTGCAAAAGAGTTGAGCATTCAATTCCTTTTGGAATTAATAAACTCCCATGCTGCAACACAAGCACCGCTTAGCCTAGGCGAGGCATTTCAAGGGTTTCGTACTGTGATTGCATATGAGATGGCAATCATGCTGGTCTTTCTGCTGGCTTTGTTGCTTAGTTGTCCACAACCATTATGTGGGATGGTTATGGTGACAATCTCCTTTCTTGGACTATTCGTCCACATTCCAGATCTGGTGGGCAAGGCACCAGGGATTGCTGTGACTAGCGGTTTCTTCAGGATGCCTCTCATTTGCTTTACAACCATAGTGGCTTTTGTTCTTACGCTGGTTTTTGTTTTCCTTGCGGTGTTCTTTGCTTATCTTACCTATGGATGCGCACGTGGTGCGGGGATATCAACAGGGGGAGAACTTGAGGTTGCCATGCAAGATTCGCTGGGGAATGTGGAAGAGGGGGGGGTGAACTGATAGCTTTATGTAACGATTTGTTAGGCTCTTTTTTTTTTTCATCGGGGGGTGCTTGTTTGTTTGCGTACGTGATGTTTTGTTTAGTCCATATAAACATTAAATTTTTATATAATTATGTTTATATAAAAATTTAATTATAAAAATAAAAAAATTACTAGTAATTAGTCAACCTAATGAGTGATTTTTCTACTTCTTAATTATCAGTTTTTTTTAATTACACTCAAGTATTGTTACGGTTTGACCTCTATATCATTGGTTTAAC

Coding sequences of Glyma18g48060

Limit To All Plant Sequences

>Glyma18g48060.2   sequence type=CDS   gene model=Glyma18g48060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCCCAACAACGTGGAATCTGGGACAACGGATGATACAGAGGTAGTAGGACAACAACAACGTCATAGTCCAATACATGATATTGCCTTGCAGATACAGACACAGGCTCCGGTGGAAACCCATGGGCTATACCAAACAAATGATGTTCATACGCGTCCGATGGGCATGGCCGTGATAGACGCGATCCTCCCACCACAAAATCCTTCTAGCTTAATGAGCTTCAAGGAAGCTGTAGTGTCAAATGCAAGGAGAATTCCCCTTAAGACCCTAGTTACTTTGCTCCTTGTTTGTGTTGGTATCATGGATCATCTTGCAAAAGAGTTGAGCATTCAATTCCTTTTGGAATTAATAAACTCCCATGCTGCAACACAAGCACCGCTTAGCCTAGGCGAGGCATTTCAAGGGTTTCGTACTGTGATTGCATATGAGATGGCAATCATGCTGGTCTTTCTGCTGGCTTTGTTGCTTAGTTGTCCACAACCATTATGTGGGATGGTTATGGTGACAATCTCCTTTCTTGGACTATTCGTCCACATTCCAGATCTGGTGGGCAAGGCACCAGGGATTGCTGTGACTAGCGGTTTCTTCAGGATGCCTCTCATTTGCTTTACAACCATAGTGGCTTTTGTTCTTACGCTGGTTTTTGTTTTCCTTGCGGTGTTCTTTGCTTATCTTACCTATGGATGCGCACGTGGTGCGGGGATATCAACAGGGGGAGAACTTGAGGTTGCCATGCAAGATTCGCTGGGGAATGTGGAAGAGGGGGGGGTGAACTGA

>Glyma18g48060.3   sequence type=CDS   gene model=Glyma18g48060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCCCAACAACGTGGAATCTGGGACAACGGATGATACAGAGGTAGTAGGACAACAACAACGTCATAGTCCAATACATGATATTGCCTTGCAGATACAGACACAGGCTCCGGTGGAAACCCATGGGCTATACCAAACAAATGATGTTCATACGCGTCCGATGGGCATGGCCGTGATAGACGCGATCCTCCCACCACAAAATCCTTCTAGCTTAATGAGCTTCAAGGAAGCTGTAGTGTCAAATGCAAGGAGAATTCCCCTTAAGACCCTAGTTACTTTGCTCCTTGTTTGTGTTGGTATCATGGATCATCTTGCAAAAGAGTTGAGCATTCAATTCCTTTTGGAATTAATAAACTCCCATGCTGCAACACAAGCACCGCTTAGCCTAGGCGAGGCATTTCAAGGGTTTCGTACTGTGATTGCATATGAGATGGCAATCATGCTGGTCTTTCTGCTGGCTTTGTTGCTTAGTTGTCCACAACCATTATGTGGGATGGTTATGGTGACAATCTCCTTTCTTGGACTATTCGTCCACATTCCAGATCTGGTGGGCAAGGCACCAGGGATTGCTGTGACTAGCGGTTTCTTCAGGATGCCTCTCATTTGCTTTACAACCATAGTGGCTTTTGTTCTTACGCTGGTTTTTGTTTTCCTTGCGGTGTTCTTTGCTTATCTTACCTATGGATGCGCACGTGGTGCGGGGATATCAACAGGGGGAGAACTTGAGGTTGCCATGCAAGATTCGCTGGGGAATGTGGAAGAGGGGGGGGTGAACTGA

Predicted protein sequences of Glyma18g48060

Limit To All Plant Sequences

>Glyma18g48060.2   sequence type=predicted peptide   gene model=Glyma18g48060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPNNVESGTTDDTEVVGQQQRHSPIHDIALQIQTQAPVETHGLYQTNDVHTRPMGMAVIDAILPPQNPSSLMSFKEAVVSNARRIPLKTLVTLLLVCVGIMDHLAKELSIQFLLELINSHAATQAPLSLGEAFQGFRTVIAYEMAIMLVFLLALLLSCPQPLCGMVMVTISFLGLFVHIPDLVGKAPGIAVTSGFFRMPLICFTTIVAFVLTLVFVFLAVFFAYLTYGCARGAGISTGGELEVAMQDSLGNVEEGGVN*

>Glyma18g48060.3   sequence type=predicted peptide   gene model=Glyma18g48060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPNNVESGTTDDTEVVGQQQRHSPIHDIALQIQTQAPVETHGLYQTNDVHTRPMGMAVIDAILPPQNPSSLMSFKEAVVSNARRIPLKTLVTLLLVCVGIMDHLAKELSIQFLLELINSHAATQAPLSLGEAFQGFRTVIAYEMAIMLVFLLALLLSCPQPLCGMVMVTISFLGLFVHIPDLVGKAPGIAVTSGFFRMPLICFTTIVAFVLTLVFVFLAVFFAYLTYGCARGAGISTGGELEVAMQDSLGNVEEGGVN*

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