Glyma18g48050 - SoyBase

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Report for Sequence Feature Glyma18g48050

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57566912
stop:	57576650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65540	AT	Annotation by Michelle Graham. TAIR10: LETM1-like protein \| chr1:24362382-24366011 REVERSE LENGTH=736	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG1043	KOG	Ca2+-binding transmembrane protein LETM1/MRS7	JGI		ISS
PTHR14009	Panther	LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN	JGI		ISS
PTHR14009:SF1	Panther	LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN	JGI		ISS
PF07766	PFAM	LETM1-like protein	JGI		ISS
UniRef100_G7KSF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LETM1 and EF-hand domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KSF6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EE18	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EE18 related cluster n=1 Tax=unknown RepID=UPI000233EE18	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48050

Paralog	Evidence	Comments
Glyma09g38300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g245200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48050

Limit To All Plant Sequences

>Glyma18g48050.3   sequence type=transcript   gene model=Glyma18g48050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAGTATAAGTAGTAAAGTAATTTTGAACACGTCGGCGCAATACACACACATGCACTGTGGTAAAAGTAAAAAAATGTTTCATCAATGGAAAAATTGGAAGCGCTCAGAGTGTTGTTCTTGTTCCCTTATTCACTCATAACAATCATTTCATTCCACGATTGAGCTATTATCGAAGACGCGCATTTCCTCCTCTCTCCGGTTTGCAATTCTCGATTTGCCTCTGGCGGCGGTGCTGTGAAGTGAACTAAGTAACACCGTGAAAACGACTCTCTTTCCGTGCGTTGTTTTCATGAGCGACGGTGATAAATTTCTGCATTCTTTGTATCCATGGCATTGAAAGTTGAAACATTGAATTAGTAAGGGTTTTGTTTGGGGAGAACTGGCATCAGAAGCTAGAATCTGTTGTTATGGCTTCAAGAGTGATTTTGCAAAAGAGAAGGAGCCTCTTCTTCAACCCCCTATGTAGTCAACCTACTTGCATTATTTTTGGATTCTCACGTGTTGGGCATGCTCAGCCATTAGAATCTAGTGAATTAGAAGGTTTGAGCCGGTTTCCCTTATGTCCATCTGCAACTACGGAAAATGGACAGGAAAAAAAATTATTTACTGTCAACAAAGATGATCTTGCAGCTTATCCTGCTTTGAGATTTATCTCGCCTAGTTCCTTTAGAGTATCAAGTTTTGGATTTAGATCTGACAAGATAGAGTTGGTTTATCTTTCAAGATTGGGGTGGTTATCCCAATGTACCCGTAATATTTCCATGGCTTCAGCTGATCAATCTGGATTGGCTAGCAATAATAAGGGAAGTGAACAATCAGCTACTAAACAGAAAAAGGAAGCTTCACCAGAGGAATGCGATGAAGCTGTTGAAGGCTTGAGCAGCATAAAAGCAAAAGCTAAGGCTAAACAAATGCAAGAACCACATAAGAGTGCGGATTCTATTATAAAGAAATTATGGGCTAAGATTTTAGGAATTGGTCCAGCATTCAGAACTATAATGTCAATGAGCAGGGATGACTGGGCAAAGAAGTTTCGTCATTGGTGGGATGAATTTAAATCTACCCTGCAACACTACTGGTTTGGTACAAAACTACTTTGGGCTGATATTAGGATAAGCTCCAGATTATTGTTGAAACTTGCCGGTGGAAAGAGTCTTTCTAGAAGGGAGAGGCAGCAACTCACAAGGACAACAGCTGATATTTTCAGGCTAGTTCCATTTGCTGTATTTATCATAGTTCCATTCATGGAGTTATTGTTGCCAGTATTCCTTAAATTATTTCCCAACATGCTGCCTTCCACTTTCCAGGACAAGATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTGTAAAAGAAATGGCAAAGGAGATTCAGAACTCACAAAGTGGAGAAATGAAGAAGACAGCAGAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAATGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAGGCCTCGCTTGGTAAATATGTGTAAATATATGGGCATCAGCCCATATGGAACTGATGCATATTTGCGTTACATGCTCCGCAAAAGATTACAGGAGATCAAGAATGATGATAAACTGATTCAAGTTGAGGGTGTCGAATCTCTTTCAGAAGCAGAGCTTCGTCAAGCTTGTAGAGATCGAGGATTGCTTGGATTACTTTCAGTGGAAGAAATGCGGCAGCAGCTTAGGGACTGGCTGGATTTGTCTCTCAACCATTCTGTGCCATCTTCCCTCTTAATTCTTTCTAGAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACTTTGCCATCTGAAGATTCTGTTTCAGAAAGGAAGAGGAAGTTGGAATATCTTGAAATGCAAGAGGAGCTGATCAAGGAGGAGGAAAAGAAAGAGGAGGCAGAGCAGGCCAAAATGGTAGAATCTGTTGGTAGTGAAGGGGATTTGGGTATTATGAAAGAGAGGGCTTCAACAACCAACCAAACACAAGGAGAGGTAAAAGCAAAGACATTGGATAAACAGGAGCACCTCTGGGAGCTCAGCCGTGCATTAGCCGTTTTAGCATCAGCATCTTCGGTGAGCAGGGAACGTGAAGAGTTTTTGAGGCTTGTTAGAAAGGAGGTATATAGATTCTATTGCATATGAATACTTTATGGCCCTTCAAAGAAAAGTCAAATTGCAATATCTTTTGAATGTAATTTAGTATGTTTCTGCATTCACATTATTTAACATTGATTTGTTAAAAATTGATTTGCTGGATAAAATAAATGCATTTTGTTAGAAGCTTAGAATTTAACTTTTGTCACCATTTGTTCCCAATAAAAAAATCAGTAATTGAGTTTCAGTTCTTGATCTTGACATTATCATCATTGTTGTTGTTGTTTGATAAAAAAGATTCAAAATGTTTTCTCTATAGCTTTGTACCGAGAGAGAGACTTGGCTGGATAGGTTAGTCTCTAATATGACTGATTCACCTTCTTGTATCTGTGTTGTACACATAAGGTAGGGATATGGGCACATAAGAGGATAAGCCCAGCCCATTGCATGTTAACTGTCAT

Coding sequences of Glyma18g48050

Limit To All Plant Sequences

>Glyma18g48050.2   sequence type=CDS   gene model=Glyma18g48050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAGAGTGATTTTGCAAAAGAGAAGGAGCCTCTTCTTCAACCCCCTATGTAGTCAACCTACTTGCATTATTTTTGGATTCTCACGTGTTGGGCATGCTCAGCCATTAGAATCTAGTGAATTAGAAGGTTTGAGCCGGTTTCCCTTATGTCCATCTGCAACTACGGAAAATGGACAGGAAAAAAAATTATTTACTGTCAACAAAGATGATCTTGCAGCTTATCCTGCTTTGAGATTTATCTCGCCTAGTTCCTTTAGAGTATCAAGTTTTGGATTTAGATCTGACAAGATAGAGTTGGTTTATCTTTCAAGATTGGGGTGGTTATCCCAATGTACCCGTAATATTTCCATGGCTTCAGCTGATCAATCTGGATTGGCTAGCAATAATAAGGGAAGTGAACAATCAGCTACTAAACAGAAAAAGGAAGCTTCACCAGAGGAATGCGATGAAGCTGTTGAAGGCTTGAGCAGCATAAAAGCAAAAGCTAAGGCTAAACAAATGCAAGAACCACATAAGAGTGCGGATTCTATTATAAAGAAATTATGGGCTAAGATTTTAGGAATTGGTCCAGCATTCAGAACTATAATGTCAATGAGCAGGGATGACTGGGCAAAGAAGTTTCGTCATTGGTGGGATGAATTTAAATCTACCCTGCAACACTACTGGTTTGGTACAAAACTACTTTGGGCTGATATTAGGATAAGCTCCAGATTATTGTTGAAACTTGCCGGTGGAAAGAGTCTTTCTAGAAGGGAGAGGCAGCAACTCACAAGGACAACAGCTGATATTTTCAGGCTAGTTCCATTTGCTGTATTTATCATAGTTCCATTCATGGAGTTATTGTTGCCAGTATTCCTTAAATTATTTCCCAACATGCTGCCTTCCACTTTCCAGGACAAGATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTGTAAAAGAAATGGCAAAGGAGATTCAGAACTCACAAAGTGGAGAAATGAAGAAGACAGCAGAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAATGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAGGCCTCGCTTGGTAAATATGTGTAAATATATGGGCATCAGCCCATATGGAACTGATGCATATTTGCGTTACATGCTCCGCAAAAGATTACAGGAGATCAAGAATGATGATAAACTGATTCAAGTTGAGGGTGTCGAATCTCTTTCAGAAGCAGAGCTTCGTCAAGCTTGTAGAGATCGAGGATTGCTTGGATTACTTTCAGTGGAAGAAATGCGGCAGCAGCTTAGGGACTGGCTGGATTTGTCTCTCAACCATTCTGTGCCATCTTCCCTCTTAATTCTTTCTAGAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACTTTGCCATCTGAAGATTCTGTTTCAGAAAGGAAGAGGAAGTTGGAATATCTTGAAATGCAAGAGGAGCTGATCAAGGAGGAGGAAAAGAAAGAGGAGGCAGAGCAGGCCAAAATGGTAGAATCTGTTGGTAGTGAAGGGGATTTGGGTATTATGAAAGAGAGGGCTTCAACAACCAACCAAACACAAGGAGAGGTAAAAGCAAAGACATTGGATAAACAGGAGCACCTCTGGGAGCTCAGCCGTGCATTAGCCGTTTTAGCATCAGCATCTTCGGTGAGCAGGGAACGTGAAGAGTTTTTGAGGCTTGTTAGAAAGGAGATGGAGCTTTATGATAGTATGGTAGGGAAAGAAGGTACAGAAGGTGAGCAGGAAGCTAAGAATGCCTATAAAGCTGCAAGGAAGGAAAGTGATGGTGCTATTGAGGTAGCTATTGGTGATAAGGTTTCTTCAGCACTTGTTGACAGGGTTGATACTATGCTCCAGACACTTGAAAAAGAAATTGATGATGTTGATGCTAAAATTGGAGACCGCTGGCGGTTGCTAGACAGGGATTATGATGGGAAAGTGACACCTGAGGAGGTAGTATCTGCTGCTATGTATCTGAAGGACACTCTGAGCAAAGAAGGAATTCATGAGCTTATCAGCAACCTTTCCAAGGATAGCGATGGGAAAATATTGGTGGAAGACATTGTCAAATTGGGCACCCAGAAAGAAGAAGCCGATAGAGATGAAGCGGGAAGATCATAG

>Glyma18g48050.3   sequence type=CDS   gene model=Glyma18g48050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAGAGTGATTTTGCAAAAGAGAAGGAGCCTCTTCTTCAACCCCCTATGTAGTCAACCTACTTGCATTATTTTTGGATTCTCACGTGTTGGGCATGCTCAGCCATTAGAATCTAGTGAATTAGAAGGTTTGAGCCGGTTTCCCTTATGTCCATCTGCAACTACGGAAAATGGACAGGAAAAAAAATTATTTACTGTCAACAAAGATGATCTTGCAGCTTATCCTGCTTTGAGATTTATCTCGCCTAGTTCCTTTAGAGTATCAAGTTTTGGATTTAGATCTGACAAGATAGAGTTGGTTTATCTTTCAAGATTGGGGTGGTTATCCCAATGTACCCGTAATATTTCCATGGCTTCAGCTGATCAATCTGGATTGGCTAGCAATAATAAGGGAAGTGAACAATCAGCTACTAAACAGAAAAAGGAAGCTTCACCAGAGGAATGCGATGAAGCTGTTGAAGGCTTGAGCAGCATAAAAGCAAAAGCTAAGGCTAAACAAATGCAAGAACCACATAAGAGTGCGGATTCTATTATAAAGAAATTATGGGCTAAGATTTTAGGAATTGGTCCAGCATTCAGAACTATAATGTCAATGAGCAGGGATGACTGGGCAAAGAAGTTTCGTCATTGGTGGGATGAATTTAAATCTACCCTGCAACACTACTGGTTTGGTACAAAACTACTTTGGGCTGATATTAGGATAAGCTCCAGATTATTGTTGAAACTTGCCGGTGGAAAGAGTCTTTCTAGAAGGGAGAGGCAGCAACTCACAAGGACAACAGCTGATATTTTCAGGCTAGTTCCATTTGCTGTATTTATCATAGTTCCATTCATGGAGTTATTGTTGCCAGTATTCCTTAAATTATTTCCCAACATGCTGCCTTCCACTTTCCAGGACAAGATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTGTAAAAGAAATGGCAAAGGAGATTCAGAACTCACAAAGTGGAGAAATGAAGAAGACAGCAGAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAATGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAGGCCTCGCTTGGTAAATATGTGTAAATATATGGGCATCAGCCCATATGGAACTGATGCATATTTGCGTTACATGCTCCGCAAAAGATTACAGGAGATCAAGAATGATGATAAACTGATTCAAGTTGAGGGTGTCGAATCTCTTTCAGAAGCAGAGCTTCGTCAAGCTTGTAGAGATCGAGGATTGCTTGGATTACTTTCAGTGGAAGAAATGCGGCAGCAGCTTAGGGACTGGCTGGATTTGTCTCTCAACCATTCTGTGCCATCTTCCCTCTTAATTCTTTCTAGAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACTTTGCCATCTGAAGATTCTGTTTCAGAAAGGAAGAGGAAGTTGGAATATCTTGAAATGCAAGAGGAGCTGATCAAGGAGGAGGAAAAGAAAGAGGAGGCAGAGCAGGCCAAAATGGTAGAATCTGTTGGTAGTGAAGGGGATTTGGGTATTATGAAAGAGAGGGCTTCAACAACCAACCAAACACAAGGAGAGGTAAAAGCAAAGACATTGGATAAACAGGAGCACCTCTGGGAGCTCAGCCGTGCATTAGCCGTTTTAGCATCAGCATCTTCGGTGAGCAGGGAACGTGAAGAGTTTTTGAGGCTTGTTAGAAAGGAGGTATATAGATTCTATTGCATATGA

Predicted protein sequences of Glyma18g48050

Limit To All Plant Sequences

>Glyma18g48050.2   sequence type=predicted peptide   gene model=Glyma18g48050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRVILQKRRSLFFNPLCSQPTCIIFGFSRVGHAQPLESSELEGLSRFPLCPSATTENGQEKKLFTVNKDDLAAYPALRFISPSSFRVSSFGFRSDKIELVYLSRLGWLSQCTRNISMASADQSGLASNNKGSEQSATKQKKEASPEECDEAVEGLSSIKAKAKAKQMQEPHKSADSIIKKLWAKILGIGPAFRTIMSMSRDDWAKKFRHWWDEFKSTLQHYWFGTKLLWADIRISSRLLLKLAGGKSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMELLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEIQNSQSGEMKKTAEDLDEFMNKVRTGARVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPYGTDAYLRYMLRKRLQEIKNDDKLIQVEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTTLPSEDSVSERKRKLEYLEMQEELIKEEEKKEEAEQAKMVESVGSEGDLGIMKERASTTNQTQGEVKAKTLDKQEHLWELSRALAVLASASSVSREREEFLRLVRKEMELYDSMVGKEGTEGEQEAKNAYKAARKESDGAIEVAIGDKVSSALVDRVDTMLQTLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVVSAAMYLKDTLSKEGIHELISNLSKDSDGKILVEDIVKLGTQKEEADRDEAGRS*

>Glyma18g48050.3   sequence type=predicted peptide   gene model=Glyma18g48050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRVILQKRRSLFFNPLCSQPTCIIFGFSRVGHAQPLESSELEGLSRFPLCPSATTENGQEKKLFTVNKDDLAAYPALRFISPSSFRVSSFGFRSDKIELVYLSRLGWLSQCTRNISMASADQSGLASNNKGSEQSATKQKKEASPEECDEAVEGLSSIKAKAKAKQMQEPHKSADSIIKKLWAKILGIGPAFRTIMSMSRDDWAKKFRHWWDEFKSTLQHYWFGTKLLWADIRISSRLLLKLAGGKSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMELLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEIQNSQSGEMKKTAEDLDEFMNKVRTGARVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPYGTDAYLRYMLRKRLQEIKNDDKLIQVEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTTLPSEDSVSERKRKLEYLEMQEELIKEEEKKEEAEQAKMVESVGSEGDLGIMKERASTTNQTQGEVKAKTLDKQEHLWELSRALAVLASASSVSREREEFLRLVRKEVYRFYCI*

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