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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G36700 | AT | Annotation by Michelle Graham. TAIR10: 2-phosphoglycolate phosphatase 1 | chr5:14421929-14424430 REVERSE LENGTH=362 | SoyBase | E_val: 0 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0008967 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoglycolate phosphatase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0016791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatase activity | SoyBase | N/A | ISS |
| KOG2882 | KOG | p-Nitrophenyl phosphatase | JGI | ISS | |
| PTHR19288 | Panther | 4-NITROPHENYLPHOSPHATASE-RELATED | JGI | ISS | |
| PTHR19288:SF6 | Panther | 4-NITROPHENYLPHOSPHATASE | JGI | ISS | |
| UniRef100_G7KSE8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycolate phosphatase n=1 Tax=Medicago truncatula RepID=G7KSE8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E6FA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E6FA related cluster n=1 Tax=unknown RepID=UPI000233E6FA | SoyBase | E_val: 0 | ISS |
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Glyma18g48010 not represented in the dataset |
Glyma18g48010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g38340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g244900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g48010.2 sequence type=transcript gene model=Glyma18g48010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTTGGGCATGAGATTATGATCCAAAAGTGCACCTACCAGGTCCACTCAAACCTATGGCTCCTATTCGACCAATTAACCACTCCCCCTTCCTAGTAGTTGGTGCACCCATGCACGCACCTCACAATTAATAACCCAAAAAAACCAAAATAAAAAAAAAAACTTTGCAATTTCGTAGGAGATGCTCAGGAGCAGCACGCTAACACAGAGTGTTACAGTCACCTGTGTTCATCACAGTCACAGACAATGGTTCCAATCAATTCCCGTAAATTATAGATTCTGTGACGCTGCTCGGAACTCTCTATCATCCAACTCCGCCATCTTCAAGTGGAAAAGAACGGCTAATTATAATCGTAACCGTTCTGGAATGGGAACCTTCACCACGCGCGCGTTGGCGCAGCCGCTCCAGAACGCCGACGAACTCATCGATTCCGTCGAGACATTTATTTTCGATTGTGACGGAGTTATATGGAAAGGTGACAAATTAATAGAAGGGGTGCCTGAAACGCTTGACATGCTTCGGTCAAAGGGCAAAAGATTAGTTTTTGTCACCAATAACTCAACAAAGTCTAGGAAGCAATATGGAAAGAAGTTTGAAACACTTGGCCTGAATGTCAGCGAGGAGGAGATTTTTGCATCATCCTTTGCAGCTGCTGCATATCTGAAGTCCATTGATTTCCCAAAAGATAAAAAGGTTTATGTCATTGGAGAAGATGGTATCTTGAAGGAGCTTGAGCTTGCTGGATATCAGTACCTTGGTGGGCCGGAAGATGGTGGGAAAAAGATAGAACTGAAGCCAGGATTTTTGATGGAGCATGATGAAGATGTTGGAGCAGTTGTTGTTGGATTTGATCGCCACTTCAACTACTATAAAATCCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCTACAAACCGAGATGCTGTTACTCATCTCACAGATGCTCAAGAATGGGCAGGTGGGGGCTCAATGGTTGGCGCTATCAGTGGATCTACTCAACGTGAACCATTAGTTGTTGGAAAACCCTCAACGTTTATGATGGATTACTTGGCAAACAAATTTGGCATTTCGAAGTCACAGATATGTATGGTTGGGGACAGATTAGACACTGATATCTTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTGCTCTCAGGCGTCACCACACTGGCCATGCTTCAGAGCCCTAACAACTCCATACAGCCGGACTTCTATACCAACAAAATTTCAGATTTTCTTTCCCTGAAAGCTGCAGCTGTATGACTATAATATTTATACAGTATCCCCAAATGGTGGTGGGAAAAGTCATGTATTTAAGAAGTAAATTGAATTTTGTTCATTCCTTATTTATTTTTATTAATCAATACTAGTTCCTAAGAGGACTGAAAGTAGGCAACAAAATGACAAAATAAAGTCTCTCAGAGACTAGTCTTAGTGAATGAAAATAAACGAGACTAAAAATTTAATTATATATATAATTATATATATATATAATTATTTATAATTTTCTTAATCTTATAATTCTTATTTTTTAATAAACAAAAAATA
>Glyma18g48010.1 sequence type=CDS gene model=Glyma18g48010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCAGGAGCAGCACGCTAACACAGAGTGTTACAGTCACCTGTGTTCATCACAGTCACAGACAATGGTTCCAATCAATTCCCGTAAATTATAGATTCTGTGACGCTGCTCGGAACTCTCTATCATCCAACTCCGCCATCTTCAAGTGGAAAAGAACGGCTAATTATAATCGTAACCGTTCTGGAATGGGAACCTTCACCACGCGCGCGTTGGCGCAGCCGCTCCAGAACGCCGACGAACTCATCGATTCCGTCGAGACATTTATTTTCGATTGTGACGGAGTTATATGGAAAGGTGACAAATTAATAGAAGGGGTGCCTGAAACGCTTGACATGCTTCGGTCAAAGGGCAAAAGATTAGTTTTTGTCACCAATAACTCAACAAAGTCTAGGAAGCAATATGGAAAGAAGTTTGAAACACTTGGCCTGAATGTCAGCGAGGAGGAGATTTTTGCATCATCCTTTGCAGCTGCTGCATATCTGAAGTCCATTGATTTCCCAAAAGATAAAAAGGTTTATGTCATTGGAGAAGATGGTATCTTGAAGGAGCTTGAGCTTGCTGGATATCAGTACCTTGGTGGGCCGGAAGATGGTGGGAAAAAGATAGAACTGAAGCCAGGATTTTTGATGGAGCATGATGAAGATGTTGGAGCAGTTGTTGTTGGATTTGATCGCCACTTCAACTACTATAAAATCCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCTACAAACCGAGATGCTGTTACTCATCTCACAGATGCTCAAGAATGGGCAGGTTGCATTTCAACCAAATTAGCAGTTCCTAGCAGGCTCACAAACCTGAAAACAGTTCAACACTATCAATACACAGTGGGGGCTCAATGGTTGGCGCTATCAGTGGATCTACTCAACGTGAACCATTAG >Glyma18g48010.2 sequence type=CDS gene model=Glyma18g48010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCAGGAGCAGCACGCTAACACAGAGTGTTACAGTCACCTGTGTTCATCACAGTCACAGACAATGGTTCCAATCAATTCCCGTAAATTATAGATTCTGTGACGCTGCTCGGAACTCTCTATCATCCAACTCCGCCATCTTCAAGTGGAAAAGAACGGCTAATTATAATCGTAACCGTTCTGGAATGGGAACCTTCACCACGCGCGCGTTGGCGCAGCCGCTCCAGAACGCCGACGAACTCATCGATTCCGTCGAGACATTTATTTTCGATTGTGACGGAGTTATATGGAAAGGTGACAAATTAATAGAAGGGGTGCCTGAAACGCTTGACATGCTTCGGTCAAAGGGCAAAAGATTAGTTTTTGTCACCAATAACTCAACAAAGTCTAGGAAGCAATATGGAAAGAAGTTTGAAACACTTGGCCTGAATGTCAGCGAGGAGGAGATTTTTGCATCATCCTTTGCAGCTGCTGCATATCTGAAGTCCATTGATTTCCCAAAAGATAAAAAGGTTTATGTCATTGGAGAAGATGGTATCTTGAAGGAGCTTGAGCTTGCTGGATATCAGTACCTTGGTGGGCCGGAAGATGGTGGGAAAAAGATAGAACTGAAGCCAGGATTTTTGATGGAGCATGATGAAGATGTTGGAGCAGTTGTTGTTGGATTTGATCGCCACTTCAACTACTATAAAATCCAGTATGGGACACTCTGTATACGTGAAAACCCTGGATGTCTTTTCATTGCTACAAACCGAGATGCTGTTACTCATCTCACAGATGCTCAAGAATGGGCAGGTGGGGGCTCAATGGTTGGCGCTATCAGTGGATCTACTCAACGTGAACCATTAGTTGTTGGAAAACCCTCAACGTTTATGATGGATTACTTGGCAAACAAATTTGGCATTTCGAAGTCACAGATATGTATGGTTGGGGACAGATTAGACACTGATATCTTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTTGTGCTCTCAGGCGTCACCACACTGGCCATGCTTCAGAGCCCTAACAACTCCATACAGCCGGACTTCTATACCAACAAAATTTCAGATTTTCTTTCCCTGAAAGCTGCAGCTGTATGA
>Glyma18g48010.1 sequence type=predicted peptide gene model=Glyma18g48010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRSSTLTQSVTVTCVHHSHRQWFQSIPVNYRFCDAARNSLSSNSAIFKWKRTANYNRNRSGMGTFTTRALAQPLQNADELIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVSEEEIFASSFAAAAYLKSIDFPKDKKVYVIGEDGILKELELAGYQYLGGPEDGGKKIELKPGFLMEHDEDVGAVVVGFDRHFNYYKIQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGCISTKLAVPSRLTNLKTVQHYQYTVGAQWLALSVDLLNVNH* >Glyma18g48010.2 sequence type=predicted peptide gene model=Glyma18g48010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRSSTLTQSVTVTCVHHSHRQWFQSIPVNYRFCDAARNSLSSNSAIFKWKRTANYNRNRSGMGTFTTRALAQPLQNADELIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVSEEEIFASSFAAAAYLKSIDFPKDKKVYVIGEDGILKELELAGYQYLGGPEDGGKKIELKPGFLMEHDEDVGAVVVGFDRHFNYYKIQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAISGSTQREPLVVGKPSTFMMDYLANKFGISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLAMLQSPNNSIQPDFYTNKISDFLSLKAAAV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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