SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65470 | AT | Annotation by Michelle Graham. TAIR10: chromatin assembly factor-1 (FASCIATA1) (FAS1) | chr1:24319906-24323879 REVERSE LENGTH=815 | SoyBase | E_val: 0 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0006325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin organization | SoyBase | N/A | ISS |
| GO:0006334 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleosome assembly | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009934 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization | SoyBase | N/A | ISS |
| GO:0010026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome differentiation | SoyBase | N/A | ISS |
| GO:0016444 | GO-bp | Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0031507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heterochromatin assembly | SoyBase | N/A | ISS |
| GO:0045787 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0033186 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CAF-1 complex | SoyBase | N/A | ISS |
| GO:0042393 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone binding | SoyBase | N/A | ISS |
| KOG4364 | KOG | Chromatin assembly factor-I | JGI | ISS | |
| PTHR15272 | Panther | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT A (CAF-1 SUBUNIT A) | JGI | ISS | |
| PF12253 | PFAM | Chromatin assembly factor 1 subunit A | JGI | ISS | |
| UniRef100_B9RM13 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chromatin assembly factor 1, subunit A, putative n=1 Tax=Ricinus communis RepID=B9RM13_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EE16 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EE16 related cluster n=1 Tax=unknown RepID=UPI000233EE16 | SoyBase | E_val: 0 | ISS |
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Glyma18g48000 not represented in the dataset |
Glyma18g48000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g38350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g244800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g48000.1 sequence type=CDS gene model=Glyma18g48000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCGCCGACCGAGGTTATCGACGTCGACGCCGAAAACGCTCCTACTCCTACTCCACCTCCTCCTCTTCCACCGCAAGATCCGAAATCGAATCGCGCCAAGACCATCATGCGGAAGCGGAAGAAGGTTCCCTCGTTGCTGCAAAACCTAAAGAGCTACGAGGAGAAGCAAGCGCACATCGAAACCCTCGAGAAGGAGCTCGACGCGCTGTTCCGCTACTACCAAGAAGCCATGGCTCAGAAAGTGCGTGTCGAGCTGAGCCAGTGCGGTGGTTCGCGAAATGTTGTCGTCGCGGCGCTGATGGAGGAGAGCGACCTTCCACTGTCGAAGCTCGTGGACGAGATTCACGACAAGTTGAACGAAGAAGTAAGTAACGGCGCAATCGTGCTGGCGGAGCCTGTGACCTACGCGACGGTGAAGAGTAGCGCGTTGTTTGTGGGACAGAGAGTGTCGTACGGCGTGCCAAACGCTGATGCTGATGTATTGGAGGACCATGCCGAGTCGTGTCTCTGGTGTTGGGAGACTAGGGATTTGAAATTGATGCCAAAATCCGTTCGAGGAGAGCTCAGTGTTCGACGCACTTGCCGGAGAAGGATCCATGAGAGGATTATGGCTATCTCTGAAATGATAGCAGCTCTGAAAAAGCTAGAGAGTGAACCTGATTACAATCAAGGCTTAATTAAGGCATCGGCAAAGCTCAATAAAGCTTTTCCCGAAGCAGATATCCGCTTGTTAGTGGATGGCTTGTTGCAGAAGAACAGTGAAGACATGGACAAGAAAAGAACAAGCCAAGAAAATAAATTGCTAATTAAGCAGTTGGAGAGAAATAGAAAAGAAGCTGAAAAAGAGAAAGAGAAAGAAAGCATGCACAATGAACTGCAAAGAGAAACACTGCTCAATGAATCAGATTTAAAATTGTCACAAGATGAGGCAAGAAATGGTGAGAAATCTTCTGAAAAGAAAAAACAGATAAAGAAACAGGTAGATGAGGCAGAAAAGGATCAACGGCGTAGAGAGAAAGCAGAAGCTGAATTAAAAAAGAAGCGGAGTTTACAAAAGCAAGCCTCAATTATGGAGCGTTTTCTGAAAAGAAGTAAAATTATTCCCTCATCTCCATCATCTGAGAAGGACATAGTTTCAACTAAATCAACTGCATCTGATTTGCCAAGCAGCAAGAGTGAAAGTTTGTTTGAGTCAGCTACACTTTCAATGGATTGTACTCTTGCATCAAGCAGGGATGTTATGCTTGAAGATATTCGCAAGACACAATTTTCTTCATGGCGCTCTTTAGGACAATCATTGCGCTCAAACAGAAAACAGAGATGGGGCTTACGCCAGAAACCTCGGACTGAAGTTTTTAAGGAACTTAAGCTGAGTGCCATTAAAACTGCTGTTCAAGATGTTGAGTTGGACACGGAGAAACATGTTGACAGATTGGGAGAATGCAGTTCTGATATCAGTTCATGCCCAATGAATGCAGATAGTTCTCCTGATGCCAAGTACAGTCGGGGTAGACAATTATTGCAGTTTGATAAATCTCATAGACCTGCCTTTTATGGTGTTTGGCCTGCAAAAAGTCATGTTGTTGGACCACGCCATCCTTTAAGGAAGGATCCAAGCCTGGATTATGATGTCAGCAGCGATGAGGAATGGGAAGAGGAGGAACCTGGTGAAAGTCTTTCTGATTGTGATAAAGATGAAGAGGAATGTCAAGAGGAATGTACAAAGTCTGATGAAGAAAGTGAAGATGGGTTCTTTGTACCAGATGGATATCTTTCTGAGGATGAGGGTGCACAAGTGGACAGAATGGAAATAGATGATGACATTGACGGGGCTGATAGCTCCCCTAGCTGTAAGAATGACATAGAGAGCGAGGAATTTTGTGCTTTACTTCGGCAGCAGAAATATCTAAATAATTTGACAGAGCATGCTCTCCGGAAAAATCAACCCTTGATTATATCAAATTTGATTAATGACAAGGACCTTTCATCTGATCACAATATTAGTGGTACTCCTAAGCTGGAGCAGATGTGCTTGCAAGCCTTGAGTATGTATGTAATTCCTGGCATCTCATGTATAGAAATATATGTGGATAAAATGCAAGACGAGGACCAAGAAGTCTGCCTCTCTACTGGTAAAAGTGGTGCTAGTCCAATATCTGGTGTAGCTGTCATACCTGACTCAGACCTACCCATAATTGTGACTACTATTCAAAGTTGTTCTCAAGGTATGAATAAAGTGTTAGTGTCTTTGCAACAGAAGTTCCCTTCTGTATCTAAGTCCTTATTGAAGAATAAAGTGCGTGAAGTATCTGACTATGTTGATAACCGCTTGCAGGTGAAGAAAGAAGTTCTGGATAAGCTTGGCTCGGCAGTTAAACCTGAAAAAAGCAGTGGGGGACCAAGGAGCATTGCTGCATTTTTTTCAAAAAGGTGCTTGCCCCCGACTGGGGAAGGTTCGAAACCTGGTGAAACTTCACCACTGCCACCCCTGAAATCATCTTCTGCCATTGATGAACGACCTCAAAGTTCATATAACATATAA
>Glyma18g48000.1 sequence type=predicted peptide gene model=Glyma18g48000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPTEVIDVDAENAPTPTPPPPLPPQDPKSNRAKTIMRKRKKVPSLLQNLKSYEEKQAHIETLEKELDALFRYYQEAMAQKVRVELSQCGGSRNVVVAALMEESDLPLSKLVDEIHDKLNEEVSNGAIVLAEPVTYATVKSSALFVGQRVSYGVPNADADVLEDHAESCLWCWETRDLKLMPKSVRGELSVRRTCRRRIHERIMAISEMIAALKKLESEPDYNQGLIKASAKLNKAFPEADIRLLVDGLLQKNSEDMDKKRTSQENKLLIKQLERNRKEAEKEKEKESMHNELQRETLLNESDLKLSQDEARNGEKSSEKKKQIKKQVDEAEKDQRRREKAEAELKKKRSLQKQASIMERFLKRSKIIPSSPSSEKDIVSTKSTASDLPSSKSESLFESATLSMDCTLASSRDVMLEDIRKTQFSSWRSLGQSLRSNRKQRWGLRQKPRTEVFKELKLSAIKTAVQDVELDTEKHVDRLGECSSDISSCPMNADSSPDAKYSRGRQLLQFDKSHRPAFYGVWPAKSHVVGPRHPLRKDPSLDYDVSSDEEWEEEEPGESLSDCDKDEEECQEECTKSDEESEDGFFVPDGYLSEDEGAQVDRMEIDDDIDGADSSPSCKNDIESEEFCALLRQQKYLNNLTEHALRKNQPLIISNLINDKDLSSDHNISGTPKLEQMCLQALSMYVIPGISCIEIYVDKMQDEDQEVCLSTGKSGASPISGVAVIPDSDLPIIVTTIQSCSQGMNKVLVSLQQKFPSVSKSLLKNKVREVSDYVDNRLQVKKEVLDKLGSAVKPEKSSGGPRSIAAFFSKRCLPPTGEGSKPGETSPLPPLKSSSAIDERPQSSYNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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