SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03310 | AT | Annotation by Michelle Graham. TAIR10: lecithin:cholesterol acyltransferase 3 | chr3:778767-781488 REVERSE LENGTH=447 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004607 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylcholine-sterol O-acyltransferase activity | SoyBase | N/A | ISS |
| GO:0008374 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: O-acyltransferase activity | SoyBase | N/A | ISS |
| KOG2369 | KOG | Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase | JGI | ISS | |
| PTHR11440 | Panther | LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED | JGI | ISS | |
| PTHR11440:SF3 | Panther | PHOSPHATIDYLCHOLINE-STEROL ACYLTRANSFERASE | JGI | ISS | |
| PF02450 | PFAM | Lecithin:cholesterol acyltransferase | JGI | ISS | |
| UniRef100_G7KSE0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase A1 n=1 Tax=Medicago truncatula RepID=G7KSE0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E6F9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E6F9 related cluster n=1 Tax=unknown RepID=UPI000233E6F9 | SoyBase | E_val: 0 | ISS |
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Glyma18g47970 not represented in the dataset |
Glyma18g47970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g244500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g47970.1 sequence type=CDS gene model=Glyma18g47970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGTTTTTGCCCGTGTTTTGGATCCGAGGAGGCCAAGGGGGTGGCGGATCGCGACCCGGTCCTGCTGGTTTCGGGCATGGGCGGCTCCATTGTCAATTCCAAGCCCAAGAAATTCGGGTTCACCACTCGGGTTTGGGTCAGACTCCTCCTCGCTGACGTCGAGTTCCGAAACAAGATTTGGTCCCTTTACAATCCCCAAACAGGTTACACTGAAACGTTGGACAAGAAGTCTGAAATTGTGGTCCCTGACGATGATCACGGCCTCTATGCGATCGATATTTTGGATCCGTCATGGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGATTGACATGCTTGTTGGATGTGGTTACAACAAGGGAACCACACTCTTTGGATACGGATATGATTTCAGGCAAAGCAATAGGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACAAAGCTTCTGGGGGAAGAAAAGTCAATTTGATTTCCCATTCCATGGGAGGAATCATGATATCGTGTTTCATGTCGCTTTATAGAGATGTGTTTACGAAATATGTGAATAAGTGGATTTGCTTGGCTTGCCCTTTCCAAGGAGCCCCAGGGTGCATCAATGATTCTTTATTAACTGGATTAGAGTTTGTTGATGGCTTTCAAAGCTATTTTTTTGTGAAAAGGTGGACTATGCATCAATTGCTAGTGGAGTGTCCATCAATCTATGAGATGTTGGCAAATCCATATTATGAATGGAAAAAGCAACCAGAAATTCTAGTTTGGCGAAAGCATACCAAGGATGGGGACAATAACATCAATTTGGAATCTTATGGACCAACCCAGAGTATCTCTTTATTTGAAGAAGCACTGAGGGACAATGAGGTAAATTATAAAGGGAAAACGATATCACTGCCTTTTAACTTTGATATCCTTGACTGGGCTGTTGAAACACGTCAACTTATAGCTAATGCTAAACTGCCAGATGGAGTCTGTTTCTATAACATTTATGGGACATCATTGGACACACCTTTTGATGTTTGTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACACAATGCCACTATATTCTTACGTCGATGGAGATGGAACGGTTCCTTCTGAATCTGCCAAGGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCGTGGAATATTACGAGATGAAACAGTGTTTCAACATATTCAAAAATGGTTGGGTGTTGAGCCAATGGTTGGCAAGCATTCTAAAACATCAAAAGTGGCAGATGCTCAGCCTATGGTTCTATGA
>Glyma18g47970.1 sequence type=predicted peptide gene model=Glyma18g47970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRFCPCFGSEEAKGVADRDPVLLVSGMGGSIVNSKPKKFGFTTRVWVRLLLADVEFRNKIWSLYNPQTGYTETLDKKSEIVVPDDDHGLYAIDILDPSWFTKCIHLTEVYHFHDMIDMLVGCGYNKGTTLFGYGYDFRQSNRIGKVMEGLKSKLETAHKASGGRKVNLISHSMGGIMISCFMSLYRDVFTKYVNKWICLACPFQGAPGCINDSLLTGLEFVDGFQSYFFVKRWTMHQLLVECPSIYEMLANPYYEWKKQPEILVWRKHTKDGDNNINLESYGPTQSISLFEEALRDNEVNYKGKTISLPFNFDILDWAVETRQLIANAKLPDGVCFYNIYGTSLDTPFDVCYGSENSPIEDLSEICHTMPLYSYVDGDGTVPSESAKGDGLEATERVGVAASHRGILRDETVFQHIQKWLGVEPMVGKHSKTSKVADAQPMVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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