Glyma18g47970 - SoyBase

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Report for Sequence Feature Glyma18g47970

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57493004
stop:	57499835
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03310	AT	Annotation by Michelle Graham. TAIR10: lecithin:cholesterol acyltransferase 3 \| chr3:778767-781488 REVERSE LENGTH=447	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004607	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylcholine-sterol O-acyltransferase activity	SoyBase	N/A	ISS
GO:0008374	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-acyltransferase activity	SoyBase	N/A	ISS
KOG2369	KOG	Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase	JGI		ISS
PTHR11440	Panther	LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED	JGI		ISS
PTHR11440:SF3	Panther	PHOSPHATIDYLCHOLINE-STEROL ACYLTRANSFERASE	JGI		ISS
PF02450	PFAM	Lecithin:cholesterol acyltransferase	JGI		ISS
UniRef100_G7KSE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase A1 n=1 Tax=Medicago truncatula RepID=G7KSE0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E6F9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E6F9 related cluster n=1 Tax=unknown RepID=UPI000233E6F9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g47970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g244500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47970

Limit To All Plant Sequences

>Glyma18g47970.1   sequence type=CDS   gene model=Glyma18g47970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTTTTTGCCCGTGTTTTGGATCCGAGGAGGCCAAGGGGGTGGCGGATCGCGACCCGGTCCTGCTGGTTTCGGGCATGGGCGGCTCCATTGTCAATTCCAAGCCCAAGAAATTCGGGTTCACCACTCGGGTTTGGGTCAGACTCCTCCTCGCTGACGTCGAGTTCCGAAACAAGATTTGGTCCCTTTACAATCCCCAAACAGGTTACACTGAAACGTTGGACAAGAAGTCTGAAATTGTGGTCCCTGACGATGATCACGGCCTCTATGCGATCGATATTTTGGATCCGTCATGGTTTACCAAGTGTATACATTTGACGGAGGTGTATCATTTTCATGACATGATTGACATGCTTGTTGGATGTGGTTACAACAAGGGAACCACACTCTTTGGATACGGATATGATTTCAGGCAAAGCAATAGGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACAAAGCTTCTGGGGGAAGAAAAGTCAATTTGATTTCCCATTCCATGGGAGGAATCATGATATCGTGTTTCATGTCGCTTTATAGAGATGTGTTTACGAAATATGTGAATAAGTGGATTTGCTTGGCTTGCCCTTTCCAAGGAGCCCCAGGGTGCATCAATGATTCTTTATTAACTGGATTAGAGTTTGTTGATGGCTTTCAAAGCTATTTTTTTGTGAAAAGGTGGACTATGCATCAATTGCTAGTGGAGTGTCCATCAATCTATGAGATGTTGGCAAATCCATATTATGAATGGAAAAAGCAACCAGAAATTCTAGTTTGGCGAAAGCATACCAAGGATGGGGACAATAACATCAATTTGGAATCTTATGGACCAACCCAGAGTATCTCTTTATTTGAAGAAGCACTGAGGGACAATGAGGTAAATTATAAAGGGAAAACGATATCACTGCCTTTTAACTTTGATATCCTTGACTGGGCTGTTGAAACACGTCAACTTATAGCTAATGCTAAACTGCCAGATGGAGTCTGTTTCTATAACATTTATGGGACATCATTGGACACACCTTTTGATGTTTGTTATGGTTCGGAAAACTCTCCAATAGAGGACTTATCTGAAATATGCCACACAATGCCACTATATTCTTACGTCGATGGAGATGGAACGGTTCCTTCTGAATCTGCCAAGGGTGATGGACTTGAAGCCACTGAAAGGGTGGGAGTTGCTGCTTCTCACCGTGGAATATTACGAGATGAAACAGTGTTTCAACATATTCAAAAATGGTTGGGTGTTGAGCCAATGGTTGGCAAGCATTCTAAAACATCAAAAGTGGCAGATGCTCAGCCTATGGTTCTATGA

Predicted protein sequences of Glyma18g47970

Limit To All Plant Sequences

>Glyma18g47970.1   sequence type=predicted peptide   gene model=Glyma18g47970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFCPCFGSEEAKGVADRDPVLLVSGMGGSIVNSKPKKFGFTTRVWVRLLLADVEFRNKIWSLYNPQTGYTETLDKKSEIVVPDDDHGLYAIDILDPSWFTKCIHLTEVYHFHDMIDMLVGCGYNKGTTLFGYGYDFRQSNRIGKVMEGLKSKLETAHKASGGRKVNLISHSMGGIMISCFMSLYRDVFTKYVNKWICLACPFQGAPGCINDSLLTGLEFVDGFQSYFFVKRWTMHQLLVECPSIYEMLANPYYEWKKQPEILVWRKHTKDGDNNINLESYGPTQSISLFEEALRDNEVNYKGKTISLPFNFDILDWAVETRQLIANAKLPDGVCFYNIYGTSLDTPFDVCYGSENSPIEDLSEICHTMPLYSYVDGDGTVPSESAKGDGLEATERVGVAASHRGILRDETVFQHIQKWLGVEPMVGKHSKTSKVADAQPMVL*

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