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Report for Sequence Feature Glyma18g47950

Feature Type:gene_model
Chromosome:Gm18
Start:57478518
stop:57480647
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g47950
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65290AT Annotation by Michelle Graham. TAIR10: mitochondrial acyl carrier protein 2 | chr1:24249088-24250366 REVERSE LENGTH=126 SoyBaseE_val: 3.00E-58ISS
GO:0000038GO-bp Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0042335GO-bp Annotation by Michelle Graham. GO Biological Process: cuticle development SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005759GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix SoyBaseN/AISS
GO:0000036GO-mf Annotation by Michelle Graham. GO Molecular Function: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0031177GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphopantetheine binding SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
GO:0050897GO-mf Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding SoyBaseN/AISS
KOG1748 KOG Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit JGI ISS
PTHR20863Panther ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED JGI ISS
PTHR20863:SF5Panther ACYL CARRIER PROTEIN JGI ISS
PF00550PFAM Phosphopantetheine attachment site JGI ISS
UniRef100_C6SW27UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SW27_SOYBN SoyBaseE_val: 5.00E-88ISS
UniRef100_I1L683UniRef Annotation by Michelle Graham. Most informative UniRef hit: Acyl carrier protein n=1 Tax=Glycine max RepID=I1L683_SOYBN SoyBaseE_val: 2.00E-84ISS

Expression Patterns of Glyma18g47950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47950
ParalogEvidenceComments
Glyma09g38400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47950 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g244300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g47950
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g47950
>Glyma18g47950.1   sequence type=CDS   gene model=Glyma18g47950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGAGTAGAAGCACTTTTCCTCTGATGAAATACTTGAGAGTGCGCGTCGACGCTCTTCCCCGCAACACTCCCTTAACCCTCGCTCCCAACTTTTTGATTCGCCGCTTCTGTGAAGAGGTTAGGGGTTGTTTTCTCGACAAGTCTGAGGTCACAGATCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATTCGGTAGAGATTGTGATGGCTCTTGAGGAGGAGTTTGGGTTCGAGATTCCTGATAATGAGGCAGACAAGATCAACTCCATTAAACTTGCAGTGGACTTCATTGCATCTCATCCTCAGGCAAAGTAG
Predicted protein sequences of Glyma18g47950
>Glyma18g47950.1   sequence type=predicted peptide   gene model=Glyma18g47950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASRSTFPLMKYLRVRVDALPRNTPLTLAPNFLIRRFCEEVRGCFLDKSEVTDRVISCVKNFQKVDPSKVNPNAHFQNDLGLDSLDSVEIVMALEEEFGFEIPDNEADKINSIKLAVDFIASHPQAK*






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