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Report for Sequence Feature Glyma18g47931

Feature Type:gene_model
Chromosome:Gm18
Start:57464944
stop:57472474
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g47931
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08450AT Annotation by Michelle Graham. TAIR10: calreticulin 3 | chr1:2668008-2671800 REVERSE LENGTH=424 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006995GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0010204GO-bp Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0046283GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound metabolic process SoyBaseN/AISS
GO:0055074GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion homeostasis SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005789GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
KOG0674 KOG Calreticulin JGI ISS
PTHR11073Panther CALRETICULIN AND CALNEXIN JGI ISS
PF00262PFAM Calreticulin family JGI ISS
UniRef100_G7KRL3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calreticulin-3 n=2 Tax=Medicago truncatula RepID=G7KRL3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233EE14UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EE14 related cluster n=1 Tax=unknown RepID=UPI000233EE14 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g47931
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g47931 not represented in the dataset
Glyma18g47931 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47931
ParalogEvidenceComments
Glyma09g38410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47931 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g244100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g47931
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g47931
>Glyma18g47931.1   sequence type=CDS   gene model=Glyma18g47931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCACTCGAAATCCAAACACACCCTAAATCATATTATGTACGTGATGCTGATGATTTCAGAAACAATGAGATAACACTTACTAAATGGAGAAATGAAGGCTCGAAAACTTTAGAGGACTTTAAGTCATCATTGACTATTCATACGCGTTCCTCAAGTCGTCCACGAAAAAACGTGGAAGGAGATTCAATAGAACACAAAATGTCTTTCTCACTTTGCCTTCTTCTGAACAAGTTTGTGTTGTTTTGTTTGTTGTTGCTAATACAAGTGGCAGTTTCTGAAATCATTTTTGAAGAGCGATTTGATGATGGATGGCGAAGTAGGTGGGTGAAATCAGACTGGAAAAGCAGTGAGGGCAAAGCAGGTTCATTCAAGCACACAGCTGGAAAATGGGCTGGTGATCCAGATGACAAAGGTATTCAAACATCCAGTGATGCCAAACACTTTGCCATCTCTGCAAAAATACCAGAATTCACAAACAAGAACAGAACATTGGTCCTTCAGTATTCTGTAAAATTTGAGCAAGAGATTGAATGTGGTGGAGGGTACATCAAGCTTCTCTCTGGATTTGTTAATCAAAAGAAGTTTGGTGGGGATACACCATATATTTTAATGTTTGGACCAGATTTATGTGGCACGGATACAAAGAAGCTCCATGTGATACTCTCCTACCACGGTCAAAATTACCCCATAAAGAAGGACCTGCAATGTGAAACTGACAGGTTAACTCATTTCTACACATTCATTCTCAGGCCAGATGCCACATACAGTGTCCTGGTTGATAATAGAGAGAGAGATTCTGGAAGCATGTATACAGATTGGGATATTCTTCCTCCACGAAAAATCAAAGATGTCAAGGCCAAAAAGCCTGCAGACTGGGAGGAAAGAGAATACATTGAAGACCCTGATGATGTCAAACCTGAGGGATATGATTCAATCCCAAGAGAAATTCCTGACCCAAATGCTAAAGAGCCTGAAAACTGGGATGAAGAGGAAGATGGGAAATGGAAACCACCAAAGATACCAAATCCAGCATACAAAGGACCATGGAAAAGAAAGAAAATCAAGAACCCTAACTACAAAGGGAAATGGAAAACTCCATGGATAGATAATCCAGAGTTTGAAGACGACCCTGATCTTTATGTGCTTAAGCCTATCAAGTATGTAGGCATTGAAGTTTGGCAGGTTAAAGGCGGTTCAGTTTTTGACAACGTTTTGATTTGTGACGACCCTGATTATGCAAAACAAGTTGTTGAGGAGGTGTTTGCCAACAGGGAGATTGAAAAGGAAGGTTTTGAGGAAGCAGAGAAAGTGAGAAAAGCCAAAGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAAAGGCGTAGACGAGAGAGAGGTCATGATCGACGATATCGGGACAGATATAGAGACAAATATAGAAGGCATCGCTATGATTACGATGGTCATGACGAGCTTTGA
Predicted protein sequences of Glyma18g47931
>Glyma18g47931.1   sequence type=predicted peptide   gene model=Glyma18g47931   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSLEIQTHPKSYYVRDADDFRNNEITLTKWRNEGSKTLEDFKSSLTIHTRSSSRPRKNVEGDSIEHKMSFSLCLLLNKFVLFCLLLLIQVAVSEIIFEERFDDGWRSRWVKSDWKSSEGKAGSFKHTAGKWAGDPDDKGIQTSSDAKHFAISAKIPEFTNKNRTLVLQYSVKFEQEIECGGGYIKLLSGFVNQKKFGGDTPYILMFGPDLCGTDTKKLHVILSYHGQNYPIKKDLQCETDRLTHFYTFILRPDATYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWEEREYIEDPDDVKPEGYDSIPREIPDPNAKEPENWDEEEDGKWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKGGSVFDNVLICDDPDYAKQVVEEVFANREIEKEGFEEAEKVRKAKEEEAQRAREEGERRRRERGHDRRYRDRYRDKYRRHRYDYDGHDEL*






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