SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g47920

Feature Type:gene_model
Chromosome:Gm18
Start:57458144
stop:57463038
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g47920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65270AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:24241855-24244504 FORWARD LENGTH=292 SoyBaseE_val: 9.00E-125ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4827 KOG Uncharacterized conserved protein JGI ISS
UniRef100_I1N407UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N407_SOYBN SoyBaseE_val: 0ISS
UniRef100_O80798UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT1G65270 protein n=1 Tax=Arabidopsis thaliana RepID=O80798_ARATH SoyBaseE_val: 4.00E-122ISS

Expression Patterns of Glyma18g47920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47920
ParalogEvidenceComments
Glyma09g38420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g244000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g47920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g47920
>Glyma18g47920.1   sequence type=CDS   gene model=Glyma18g47920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTATCACTCTTACGGTGGGTTCTGCCGCTGACTCTGTTGCTCACCTGCGCCCTAGGTTTCCAATCGGACGAGCTTCTCCTCGACGACGAAGAGTTCGGCATCGAAGGAGGACGAACCTCCTTTGATTCCGATTCGCATCCACCTTCCACCGCCTCCACCTCGAGGAAGAGGCTTTCCGACTCCTCCTCCGATTCCAAGATCCAGTTCCCTCTCCAACACGCTTTCGGCGACTCCGATTTCTCCGACGCCGGCAACTTCTCCGCTCGCCTCAAGACTTGGAGCCACGGCGCCCAGACGCTGACGAAGCTGCGGTTTAAGCGTGATCTTTTGACTGACGTTGAGCAGAGGAAATTTAAAGAGCTGTTGCGAGAAGATGATTTCTATAGGATTAGACTGCCGTCCAATGTTTTGAGTCCTCCCGGCCGGGAATATATTATTTCTTCAGTGAAAGCACGATGTCTTCCAGGGGATGGATTGGAGGAGCATTTTGTAATACAAATGGAAGGTGTTAACATCTTGGCTGTCAGTTATGGTGCCCCAGGGGCTTGCCCTTATCCCCGACAACTGAAGCTTCCTGGAAAGTGGTCTTTCAAGTCACACACAGTTCTAAAAAGCAGTGAACAGGCACCAAGAGCTCCAATATTTACTGAAGAGGCACTTGGCGGGCTGGAGGGAGACGGTGAGGCTGTACAGCCAATAGAAAGGTCCTTTTGGGCTAAATACTGGATGTACCTGATCCCGCTTGGACTCATAGTAATGAATGCTGTTACTCAAGCTATGAATATGCCCGAGGAACAAGCTGGCGGACAACCTGGTGCTCCGGCACAGCAGCAACCAGGATCTGCAGTACAGCGTGGACCAAGTTCTGGTGGTGTGCGTAGAAGATGA
Predicted protein sequences of Glyma18g47920
>Glyma18g47920.1   sequence type=predicted peptide   gene model=Glyma18g47920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLSLLRWVLPLTLLLTCALGFQSDELLLDDEEFGIEGGRTSFDSDSHPPSTASTSRKRLSDSSSDSKIQFPLQHAFGDSDFSDAGNFSARLKTWSHGAQTLTKLRFKRDLLTDVEQRKFKELLREDDFYRIRLPSNVLSPPGREYIISSVKARCLPGDGLEEHFVIQMEGVNILAVSYGAPGACPYPRQLKLPGKWSFKSHTVLKSSEQAPRAPIFTEEALGGLEGDGEAVQPIERSFWAKYWMYLIPLGLIVMNAVTQAMNMPEEQAGGQPGAPAQQQPGSAVQRGPSSGGVRRR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo