Glyma18g47910 - SoyBase

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Report for Sequence Feature Glyma18g47910

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57447290
stop:	57453196
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03340	AT	Annotation by Michelle Graham. TAIR10: LUC7 related protein \| chr3:786439-789762 FORWARD LENGTH=402	SoyBase	E_val: 0	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009567	GO-bp	Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
KOG0796	KOG	Spliceosome subunit	JGI		ISS
PTHR12375	Panther	UNCHARACTERIZED	JGI		ISS
PTHR12375:SF2	Panther	LUC7-RELATED	JGI		ISS
PF03194	PFAM	LUC7 N terminus	JGI		ISS
UniRef100_C6T9S5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T9S5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7KRK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Luc7-like protein n=1 Tax=Medicago truncatula RepID=G7KRK9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47910

Paralog	Evidence	Comments
Glyma09g38430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g243900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47910

Limit To All Plant Sequences

>Glyma18g47910.1   sequence type=CDS   gene model=Glyma18g47910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCGATACGGAAGCAGCTCGATGTGTTGATGGGAGCGAACCGTAACGGCGACGTCCGTGAAGTCAATCGCAAGTACTACGATCGCGACGTCTGTCGCCTCTACCTCGTCGGTCTCTGCCCTCACGAACTCTTCCAGTTAACGAAAATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGAATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAGGATGTTATAGACAAGCTTATTGGTGAGTGTGACAGGAAAATAGGGAGGGCTCTAAAGCGGCTCGAGGATGACGATGCGAAAGCTGCGATTGCGATTTCGGTCTCTGAAGTTACTCAAACAGATGAGGTGCTTGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATGATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGGAACTTAGAACTAAGAGAGCGGACAAGCAGTCTATGCTTCTTTTAGATGCCTTCAACAAAGATAGGGCATCTTTGCCCACACCTCTGCCAAATCCACCACCTTTGGCACCTCTTCCTGTAGTTGCTCCTGATGCTCGAACACAAGAGATGATAAATGAAAAGCTGAAGAAGGCTGAGGATCTTGGTGAGCAAGGAATGGTTGATGAGGCTCAAAAAGCACTGGAAGAGGCTGAAGCACTTAAGAAGCTTCCTGCCAGGCAAGAGCCAGTGTTGGATTCTTCAAAGTATACGGCGGCAGATGTCCGGATTACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTACATTTAGGGTATATGCAGATTCGCGAGAAGTTAGCTGAACTTCAAGAAGAAAGAAACAAGAGCCGAAAGACTGATCGGCTTGATGACAGGAGATCAAAAGAACGGAGTAGGGATCGAGACAGGGAGTCGAGTAGGGACCATGAACGTGGTGATAGTCGTGAACGAGGGCGAGACCATGATCGTAGGAGCAGAGATCGTGATAGGCATTATGATAGAGATCGTGGATATGATCGCGACCGTGACAGAGACTCAGACCGCACCCGCTCCTATGACTCAAGAAGCCGTCGGAGGTCACGCTCTAGATCCCAAGAGCGATCTAGAGATTATGATCGACATAGGCGTCATGATCGATACTAG

Predicted protein sequences of Glyma18g47910

Limit To All Plant Sequences

>Glyma18g47910.1   sequence type=predicted peptide   gene model=Glyma18g47910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGTDNYDRELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSEVTQTDEVLELSKQIKEKLKEADQYDLEGKSDLKIRALEVVEELRTKRADKQSMLLLDAFNKDRASLPTPLPNPPPLAPLPVVAPDARTQEMINEKLKKAEDLGEQGMVDEAQKALEEAEALKKLPARQEPVLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKTDRLDDRRSKERSRDRDRESSRDHERGDSRERGRDHDRRSRDRDRHYDRDRGYDRDRDRDSDRTRSYDSRSRRRSRSRSQERSRDYDRHRRHDRY*

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