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Report for Sequence Feature Glyma18g47870

Feature Type:gene_model
Chromosome:Gm18
Start:57428420
stop:57430699
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g47870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07470AT Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF538 | chr3:2387291-2388343 REVERSE LENGTH=169 SoyBaseE_val: 2.00E-54ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
PF04398PFAM Protein of unknown function, DUF538 JGI ISS
UniRef100_I1N402UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N402_SOYBN SoyBaseE_val: 1.00E-115ISS
UniRef100_Q9SRR9UniRef Annotation by Michelle Graham. Most informative UniRef hit: F21O3.18 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SRR9_ARATH SoyBaseE_val: 6.00E-52ISS

Expression Patterns of Glyma18g47870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47870
ParalogEvidenceComments
Glyma09g38450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g243400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g47870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g47870
>Glyma18g47870.1   sequence type=CDS   gene model=Glyma18g47870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTAAATCTGGCGTAGTTTGGATTTTGCTGCCGCTGATCGTCGCCGCGTCGTGTCTGTTATCGCCGGCGACGGCGAATTCGACGACGATATACGAGGAGCTCCGGGCGCAGGGTCTTCCGGTGGGGCTTCTCCCGAAGGGAATCGCGAAGTACTCGCTGAACGCTAGCAGCGGGGAATTCGAGGTGTGGATGAAGGAACCGTGCAACGCGAAGTTCGAGAACGAGGTGCACTACGACTCCAACATAAAGGGTGTTCTAGGGTACGGTCGGATCGGGAAATTATCCGGTGTGTCGGCGCAGGAGCTCTTCCTGTGGTTTCCCGTGAAGGGAATTAGGGTTGATGTTCCGACCTCGGGGCTCATTCATTTCGATGTTGGTGTTGCGGATAAGCAGTTCTCCCTCTCGCTCTTTGAAGATCCTCCTGATTGTAACCCCCAGGCCCAGGTTAATGTTGGTGGTGGTGAAGGTGAGCGGAGGGCTGCTTGGTAG
Predicted protein sequences of Glyma18g47870
>Glyma18g47870.1   sequence type=predicted peptide   gene model=Glyma18g47870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGKSGVVWILLPLIVAASCLLSPATANSTTIYEELRAQGLPVGLLPKGIAKYSLNASSGEFEVWMKEPCNAKFENEVHYDSNIKGVLGYGRIGKLSGVSAQELFLWFPVKGIRVDVPTSGLIHFDVGVADKQFSLSLFEDPPDCNPQAQVNVGGGEGERRAAW*






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