Glyma18g47860 - SoyBase

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Report for Sequence Feature Glyma18g47860

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57420948
stop:	57427397
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24090	AT	Annotation by Michelle Graham. TAIR10: glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases \| chr3:8697838-8700971 REVERSE LENGTH=677	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006042	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosamine biosynthetic process	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004360	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamine-fructose-6-phosphate transaminase (isomerizing) activity	SoyBase	N/A	ISS
GO:0008483	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transaminase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
KOG1268	KOG	Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains	JGI		ISS
PTHR10937	Panther	GLUCOSAMINE-FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE	JGI		ISS
PF00310	PFAM	Glutamine amidotransferases class-II	JGI		ISS
PF01380	PFAM	SIS domain	JGI		ISS
UniRef100_G7KRK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucosamine-fructose-6-phosphate aminotransferase n=1 Tax=Medicago truncatula RepID=G7KRK3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001B640BD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001B640BD related cluster n=1 Tax=unknown RepID=UPI0001B640BD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47860

Paralog	Evidence	Comments
Glyma09g38460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g243300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47860

Limit To All Plant Sequences

>Glyma18g47860.2   sequence type=CDS   gene model=Glyma18g47860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGAATATTTGCGTATCTGAATTACAACCTCAACAGAGAGAGACAATACATCTTGCAGGTTCTCTTCAATGGCTTGAGGAGATTGGAGTACCGCGGATACGATTCCGCAGGCATCGCAATCGACGATTCCTCTTCTTCTCAATTCTCTCTTTCGCCTCCTCCTCTGGTTTTCCGTCAGGAAGGAAACATCGAATCGCTCGTCAAATCCGTCTATCAAGAAGTGGGAGAAACTGAACTGAACTTGGGGGAATGCTTCGGCACGCACGCGGGAATCGCGCACACTCGCTGGGCGACTCACGGAGAGCCTGCGCCGCGGAACAGTCACCCTCAGAGCTCTGGTCATGGGAACGAGTTCTTGGTTGTTCACAATGGAGTCATCACTAATTACGAGGTTTTGAAGGAGACGCTGCTTAGACATGGCTTCACCTTTGAATCTGAAACTGACACCGAGGTCATCCCCAAGCTTGCCAAGTTTGTCCACGACAAGGCGAATGAAGCGTCCGGAGGTCAGGTTGTTACCTTCAGTCAAGTTGTTCTTGAAGTTATGAGGCATCTTGAAGGAGCTTATGCCCTTATTTTCAAAAGTCCACATTATCCTAATGAATTGATTGCCTGCAAGCGTGGTAGCCCACTGCTGCTAGGTGTTAAAGAATTGGCAGAAAATAAAGAACATGGTTCAGCATTTGAGGATAACAAATTCCTATCAAAAGATGGAAAGCCCAGAGAATTGTTTTTGTCCAGTGATGCCAATGCTGTGGTTGAGCATACAAAGAAAGTGCTAGTTATTGAGGATGGTGAAGTAGTTCATCTCAAGGATGGTGGGGTTTCTATTTTGAAATTTGAGAATGACATGGGAGAACATGGTGCTTCTCTTTCCAGAGCTTTCTCCGTGCGACGTGCATTATCTGTTCTTGAGATGGAGGTTGAGCAAATAAATAAAGGTAATTATGAGCATTACATGCAAAAGGAAATTCATGAGCAGCCAGAGTCTCTAACAACCACAATGAGGGGGAGGCTTATACATCGAGGATCTAACAAATCCAAGTCTGTTCTGCTGGGAGGGCTGAAGGATCACCTCAAAACAATTAGGCGAAGTAGAAGGATACTTTTCATTGGTTGTGGTACAAGTTATAATGCTGCTTTGGCAGCTAGACCCATATTGGAAGAACTTTCAGGTGTTCCTGTTACTATGGAAATTGCTAGTGATCTATTGGATCGAGAGGGACCAATATACCGGGAGGATACTGCCGTTTTTGTTAGTCAATCTGGTGAAACTGCAGACACTTTACTTGCACTGCAATATGCTTTAGACAATGGTGCATTGTGTGTTGGGATAACAAACACTGTTGGTAGTGCAATAGCAAGGAATACACATTGTGGTGTTCATATAAATGCTGGGGCTGAGATTGGTGTGGCAAGTACCAAGGCATACACAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGAGGCGATACAATTTCAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTCTTTTTGATCTGCCAAATAAAGTCAGAGAGGTGCTGAAGCTTGATCTGGAGATGAAGGATCTAGCAAAGCAGTTGATTGCTGAGCAGTCTCTTCTTGTCTTTGGGAGAGGATACAACTATGCAACTGCTCTTGAGGGAGCTTTGAAAGTAAAGGAAGTGGCTCTAATGCATAGTGAAGGGATACTTGCTGGTGAGATGAAGCATGGTCCTTTGGCATTAGTGGATGAAAATCTCCCAATTGTTGTTTTAGCTACCCGTGATGCCTGCTTCAGCAAACAGCAGTCTGTTATTCAGCAACTTAATGCCCGCAGAGGTCGTCTGATAGTTATGTGTTCAAAAGGGGATGCTTCCTCTGTATGCCCTAATGAATCTTGTAGGGTAATTGAAGTTCCACTAGTTGAGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGTTATTGGCATATCATCTCACTGTTCTCAGGGGACATAACGTCGACCAGCCTCGTAATCTTGCCAAGAGTGTCACAACGCAATAA

Predicted protein sequences of Glyma18g47860

Limit To All Plant Sequences

>Glyma18g47860.2   sequence type=predicted peptide   gene model=Glyma18g47860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGIFAYLNYNLNRERQYILQVLFNGLRRLEYRGYDSAGIAIDDSSSSQFSLSPPPLVFRQEGNIESLVKSVYQEVGETELNLGECFGTHAGIAHTRWATHGEPAPRNSHPQSSGHGNEFLVVHNGVITNYEVLKETLLRHGFTFESETDTEVIPKLAKFVHDKANEASGGQVVTFSQVVLEVMRHLEGAYALIFKSPHYPNELIACKRGSPLLLGVKELAENKEHGSAFEDNKFLSKDGKPRELFLSSDANAVVEHTKKVLVIEDGEVVHLKDGGVSILKFENDMGEHGASLSRAFSVRRALSVLEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIHRGSNKSKSVLLGGLKDHLKTIRRSRRILFIGCGTSYNAALAARPILEELSGVPVTMEIASDLLDREGPIYREDTAVFVSQSGETADTLLALQYALDNGALCVGITNTVGSAIARNTHCGVHINAGAEIGVASTKAYTSQIVVMVMLALAIGGDTISNQARREAIIDGLFDLPNKVREVLKLDLEMKDLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPIVVLATRDACFSKQQSVIQQLNARRGRLIVMCSKGDASSVCPNESCRVIEVPLVEDCLQPVINVVPLQLLAYHLTVLRGHNVDQPRNLAKSVTTQ*

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