Glyma18g47810 - SoyBase

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Report for Sequence Feature Glyma18g47810

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57375240
stop:	57379802
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02750	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr3:593601-595457 REVERSE LENGTH=492	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF94	Panther	PROTEIN PHOSPHATASE 2C DELTA	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9RM68	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase-2c, putative n=1 Tax=Ricinus communis RepID=B9RM68_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N3Z6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3Z6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47810

Paralog	Evidence	Comments
Glyma09g38510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g242700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47810

Limit To All Plant Sequences

>Glyma18g47810.1   sequence type=CDS   gene model=Glyma18g47810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTCCTGCTTCTCTGCGGAAAGCAGGAGCCCTCACCCCAATTCACCAAATTCATCATCTTTCAGGAAGAGCAAGAGCAACTCCAAGAAGAGGCTTGGATCAAGAACCTCTTCATTTGAGTATTGGAGGAATGAGCCTCTACATAGGATCCCTGGGAGGATCTTCCTCAATGGCTCATCCCAAGTTGCATCCTTGTTCACTCAACAAGGGAAGAAGGGTACCAACCAGGATGCCATGGTTGTTTGGGAGAACTTTTGTTCTAGACAAGATACTATTTTCTGTGGAGTTTTTGATGGCCACGGTCCATATGGTCACATGGTTGCGAAAAGAGTGAGGGATTCTCTTCCTCTAAAACTGAATGTCCATTGGGAACAAAGTGCATCTGGTGAAGAAGTCCTCAAGGAGATTAGCGTTAATACTGCAGGAAGCATGAATTCAGAAGAGGCTGCATTTGCATCTGCTGATGATGAATCCAGGGTATCTGTTGATGCCGAGGAAACAGAAAAACACCCAGAAATCTTTCAGACACTTAAAGATTCCTTTTTGAAGGCATTCAAAGTTATGGATAGAGAACTGAAGACCCACCAAAGTATTGATTGCTTCTGTAGTGGGACAACAGCAGTAACTCTGGTTAAGCAGGGACATGATCTTATTATTGGAAATGTTGGTGACTCTAGAGCTGTGCTGGGTACAAGAGAGAAAGACAATTCTCTTGTTGCCATCCAGTTAACTGTGGATCTAAAACCCAATCTTCCAGCCGAAGAAGAGAGAATTCGCAAATGTAAAGGGCGTGTTTTTGCTCTTCAGGATGAACCTGAAGTTGCTCGAGTCTGGTTGCCAAACAATGACTCACCTGGCCTTGCCATGGCAAGGGCATTTGGAGATTTTTGTCTTAAAGATTTTGGCCTGATATCTGTTCCCGAAGTGTCATACAGGCGACTCACTGAGAAGGACGAATTTGTTGTCTTGGCAACAGATGGGATTTGGGATGTTCTCTCAAACAAAGAAGTGGTGGACATCGTGGCAGCCGCGCCAAGGCGTGCCTCGGCCGCACGGGCGCTGGTCGAGTCAGCGGTTCGCTCATGGAGGTACAAGTATCCAACCTCCAAAGTGGACGACTGTGCCGTGGTTTGCCTCTTTCTGGACTCGGATTCGCACAAAGTGTGTAGTGCTTCCAATGTCATCAAGTCCAAGGAACAACCTAGTTCAGGTATCCAAGTCCACAATGGCGACAACGGAGATGTTCCTGCACCTACTGGTCTGGCAAGGTCAGGAACTTGCAGGGAAAACAATGAAGATAACAACAACAACCACAACCACAACCATAAGGAAGAGGAAATAGATACTGATGCAGAAATAGAGTGGTCTGCTCTCGAAGGAGTGTCGCGTGTGAACACATTACTAAACCTCCCAAGGTTTGAACCTGACAACAAAGACAAGGGGATGAGAAAACACAAATGA

Predicted protein sequences of Glyma18g47810

Limit To All Plant Sequences

>Glyma18g47810.1   sequence type=predicted peptide   gene model=Glyma18g47810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSCFSAESRSPHPNSPNSSSFRKSKSNSKKRLGSRTSSFEYWRNEPLHRIPGRIFLNGSSQVASLFTQQGKKGTNQDAMVVWENFCSRQDTIFCGVFDGHGPYGHMVAKRVRDSLPLKLNVHWEQSASGEEVLKEISVNTAGSMNSEEAAFASADDESRVSVDAEETEKHPEIFQTLKDSFLKAFKVMDRELKTHQSIDCFCSGTTAVTLVKQGHDLIIGNVGDSRAVLGTREKDNSLVAIQLTVDLKPNLPAEEERIRKCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPEVSYRRLTEKDEFVVLATDGIWDVLSNKEVVDIVAAAPRRASAARALVESAVRSWRYKYPTSKVDDCAVVCLFLDSDSHKVCSASNVIKSKEQPSSGIQVHNGDNGDVPAPTGLARSGTCRENNEDNNNNHNHNHKEEEIDTDAEIEWSALEGVSRVNTLLNLPRFEPDNKDKGMRKHK*

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