Glyma18g47790 - SoyBase

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Report for Sequence Feature Glyma18g47790

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57355551
stop:	57360837
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47390	AT	Annotation by Michelle Graham. TAIR10: cytidine/deoxycytidylate deaminase family protein \| chr3:17462094-17464655 FORWARD LENGTH=596	SoyBase	E_val: 0	ISS
GO:0009231	GO-bp	Annotation by Michelle Graham. GO Biological Process: riboflavin biosynthetic process	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0046443	GO-bp	Annotation by Michelle Graham. GO Biological Process: FAD metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0008703	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1018	KOG	Cytosine deaminase FCY1 and related enzymes	JGI		ISS
PTHR11079	Panther	CYTOSINE DEAMINASE	JGI		ISS
PTHR11079:SF14	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00383	PFAM	Cytidine and deoxycytidylate deaminase zinc-binding region	JGI		ISS
PF01872	PFAM	RibD C-terminal domain	JGI		ISS
PF08719	PFAM	Domain of unknown function (DUF1768)	JGI		ISS
UniRef100_B9RM69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Riboflavin-specific deaminase, putative n=1 Tax=Ricinus communis RepID=B9RM69_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N3Z5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3Z5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47790

Paralog	Evidence	Comments
Glyma09g38520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g242600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g47790

Limit To All Plant Sequences

>Glyma18g47790.2   sequence type=transcript   gene model=Glyma18g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTATAATTGTTGAAATGATAATAATAAAAAAAAAGCCCAGCATCAACAGCCATCTAGATTGAGGTGTGGTTTTGATCGGTTGCAATTGTGATTTCACTTTAGTAGACCAAACCGAGCCAACAGGATCCAAAGACAGTTTCCTTTCTTATGAGGAAAAACCGAAGCTAAGAAAACAAAACACAAGCGAGTGTTGACAATGGCACTGTCGTGTCTCACACTCACTGCCAACCCTTCTTCCATCATCTGCAAATTCAAAGCGTCCCTACCTACCGCTCCCCACGCCCTCGACGCCACCTACATCCGACGCGCCGCCCACCTCGCCGACAAATCCGCCGGCTTCACATCCCCCCACCCCAACTTCGGCTGCGTCATCGTCTCCCCCTCCGGCAAAGTCGCCGGCGAGGGCTACCTCTACGCCCAGGGCACCGCCGCCGCGGAGGTCCAGGCCGTCAAGGCCGCCGGCGAACTCTGCCGCGGCGCCACCGCGTACCTCAACATGGAGCCCGGCGACTGCCACGGTGACCACAGCGCCGTCTCTGCTCTGCTCCAGTTTGTGTTTTGTAGTTGATAAATGATCCTACCCTGTGTGTGAAACCAAACTAGGGAGGGGTCAAAAGGGTTGTGGTTGGAATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTCCGTGCACTCAGAAACCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTACCACTGGCCATGCATCATGGATAAGCTGCAAACAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGACTAACGGCTAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGAAAGCAAACCTGTGGGATATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAGGAGTTTCCAGAAGCTGCTTGCATCAAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATGCCCGAGAAGTTATGGAGTATTTCCATGATCGTGGTTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACTGTCTCACCATATGATTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAATGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCGCCACATGATCTGTTTTGGGGTGGAGGCCGAGACGGTGAAGGCTTAAATTATCTTGGTAGGCTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCATCAAGTGAGACCCCTAGTTTAACTGTATAGTGTCTTCAAAGGGAGGAGTAACAATATTTTGATGTAGAACTACTACCAAAACGGCTTGTTGTGCAACATGTCACAGACAAAAAACCATGTTACCGTGTTGTTAGTTTACTGATCAATCCTTCTATTTTGCTTAAGAGGGACTTTCATTCAAGTCTTCAACTATGTCCAAGTTTGTTTTTATGTGGCGTTTCCCATTTTGATTATTTATTTAATTAATTAATTATACTTTAGGTACTCTTACAGTCTTACAATTGTTATTTCTTGAATTTGATTTCTTCATTCTGTTTTCACGAATTTAATGTCCACTAATTTGGTTCATCTTTAACAAAAATACAATGTGAATATGCAATAGAGTGTTACATTAGCATTTCCGTAAATATTAGATGTCAAATCCCTAAATATTAGATGTTAAATTAATAGATGGATAAAAATTGCATAATTAAAATAGTGGAAAATCAAATTCGTGAAAAAAGTCAAAAGATAACGATAATAGAGAGACCAAGAGTGTAGTTAAGCTTTTTTGTATCAAAGAAAGTGGGGAGTTGATATTGGCTTCTACCACAATTGCTATTGGCCCTACACACCTGAGAAATTACCTGTGAGCCCACTCCTCGTAGTTCCCCTTCCCTGTGAAGCCAACCCATCTCCGTCCCAAATTTGAACCTCCGTATGTGTCATGGTGTTGTGATGTGTAGATCTGTTGGCGTGTCATTTGGCTCGTGCAATGACGGTGGCTTGGGTGATCGTTGGGAGCGGTGATGTGATGGAAGGTGGTGATCTGGTGTTTGGGTGCGCAGGTCTTGGTGGTGTTTTATGATGGTTATGGTTGAAGATGTTGAGTGTTCAAAGGAGGAACAAATGACAAACATACTCG

Coding sequences of Glyma18g47790

Limit To All Plant Sequences

>Glyma18g47790.1   sequence type=CDS   gene model=Glyma18g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTGTCGTGTCTCACACTCACTGCCAACCCTTCTTCCATCATCTGCAAATTCAAAGCGTCCCTACCTACCGCTCCCCACGCCCTCGACGCCACCTACATCCGACGCGCCGCCCACCTCGCCGACAAATCCGCCGGCTTCACATCCCCCCACCCCAACTTCGGCTGCGTCATCGTCTCCCCCTCCGGCAAAGTCGCCGGCGAGGGCTACCTCTACGCCCAGGGCACCGCCGCCGCGGAGGTCCAGGCCGTCAAGGCCGCCGGCGAACTCTGCCGCGGCGCCACCGCGTACCTCAACATGGAGCCCGGCGACTGCCACGGTGACCACAGCGCCGTCTCTGCTCTGCTCCAGGGAGGGGTCAAAAGGGTTGTGGTTGGAATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTCCGTGCACTCAGAAACCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTACCACTGGCCATGCATCATGGATAAGCTGCAAACAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGACTAACGGCTAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGAAAGCAAACCTGTGGGATATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAGGAGTTTCCAGAAGCTGCTTGCATCAAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATGCCCGAGAAGTTATGGAGTATTTCCATGATCGTGGTTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACTGTCTCACCATATGATTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAATGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCGCCACATGATCTGTTTTGGGGTGGAGGCCGAGACGGTGAAGGCTTAAATTATCTTGGTAGGCTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCATCAAGTGAGACCCCTAGTTTAACTGTATAG

>Glyma18g47790.2   sequence type=CDS   gene model=Glyma18g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGCATCCCCTGCAACATCTCCGTGGCAATGCTGTCCGTGCACTCAGAAACCAAGGGCTGCATGTTGATCTTCTTGGAGAGGATCTCACTAGTAATCTCATTGAGGATGCGCAGAAAGAGTGTCTTCTTGTCAATGCACCTTTGATTTGTAGAGCTGCTTTGCGTGTTCCCTTTTCCGTTCTTAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTACCACTGGCCATGCATCATGGATAAGCTGCAAACAGTCTAGAAATCTAGTTTTTGAGTTACGAGGTAGAAGTGATGCTGTTATTGTGGGAGGAAATACAGTTCGAAGGGACAATCCAAGACTAACGGCTAGACATGGAGGGGGGCATATGCCAATGCGCATTGTAATGACCCAGACTCTTGATCTTCCGGAGAAAGCAAACCTGTGGGATATGTCTGAGGTTTCTACCATAGTTGTAACACAAAGGGGTGCAAGAAGGAGTTTCCAGAAGCTGCTTGCATCAAAAGGAGTTGAGGTTGTGGAGTTTGACATATTGAATGCCCGAGAAGTTATGGAGTATTTCCATGATCGTGGTTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTAATTCACAAGGTTTATGCTTTTGTTGCTCCTAAAATTATTGGTGGAAAGAATGCACCTTCTCCTGTGGGTGATCTTGGGATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACTGTCTCACCATATGATTCAAGGATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTTTCAAATTTCTCTCCTCATCCCATTCAAATGCCTGATGAAAATGGTGATTATGTGACTTGGATGAGTGTCGAGCATTACTACCAGGCTCACAAGTTTATTGGGGTGGATGATCCTTTGGCACAAGATTGTGTTGAAATGATTAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAGAATAGGAAGGTCAATGCAAAAGCAGAAACCCTATCTGATAAGGTCTGACTGGGACAACATAAAGATCGATGTCATGTACAGGGCACTGAAATGCAAGTTCTCAATCTACCCACACTTGAATTCTATGCTGCTCTCTACTGCTGGTTCTGTTCTAGTTGAGGCTTCGCCACATGATCTGTTTTGGGGTGGAGGCCGAGACGGTGAAGGCTTAAATTATCTTGGTAGGCTGTTGATGAAATTGAGATCAGAGTTTCTTGGGGAGTCTTCATCATCAAGTGAGACCCCTAGTTTAACTGTATAG

Predicted protein sequences of Glyma18g47790

Limit To All Plant Sequences

>Glyma18g47790.1   sequence type=predicted peptide   gene model=Glyma18g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSCLTLTANPSSIICKFKASLPTAPHALDATYIRRAAHLADKSAGFTSPHPNFGCVIVSPSGKVAGEGYLYAQGTAAAEVQAVKAAGELCRGATAYLNMEPGDCHGDHSAVSALLQGGVKRVVVGMRHPLQHLRGNAVRALRNQGLHVDLLGEDLTSNLIEDAQKECLLVNAPLICRAALRVPFSVLKYAMTLDGKIAATTGHASWISCKQSRNLVFELRGRSDAVIVGGNTVRRDNPRLTARHGGGHMPMRIVMTQTLDLPEKANLWDMSEVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNAREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQALNLIDVCYEQVGPDMLISGFLQPLPDMVPVIPSPDETFVADPTVSPYDSRIIFFYKTWDPYGAFSNFSPHPIQMPDENGDYVTWMSVEHYYQAHKFIGVDDPLAQDCVEMIKSAKSPEEAARIGRSMQKQKPYLIRSDWDNIKIDVMYRALKCKFSIYPHLNSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMKLRSEFLGESSSSSETPSLTV*

>Glyma18g47790.2   sequence type=predicted peptide   gene model=Glyma18g47790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHPLQHLRGNAVRALRNQGLHVDLLGEDLTSNLIEDAQKECLLVNAPLICRAALRVPFSVLKYAMTLDGKIAATTGHASWISCKQSRNLVFELRGRSDAVIVGGNTVRRDNPRLTARHGGGHMPMRIVMTQTLDLPEKANLWDMSEVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNAREVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVYAFVAPKIIGGKNAPSPVGDLGMVEMSQALNLIDVCYEQVGPDMLISGFLQPLPDMVPVIPSPDETFVADPTVSPYDSRIIFFYKTWDPYGAFSNFSPHPIQMPDENGDYVTWMSVEHYYQAHKFIGVDDPLAQDCVEMIKSAKSPEEAARIGRSMQKQKPYLIRSDWDNIKIDVMYRALKCKFSIYPHLNSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMKLRSEFLGESSSSSETPSLTV*

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