Glyma18g47780 - SoyBase

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Report for Sequence Feature Glyma18g47780

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57349750
stop:	57354557
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G36230	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr5:14273519-14276773 FORWARD LENGTH=411	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006446	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of translational initiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG2297	KOG	Predicted translation factor, contains W2 domain	JGI		ISS
PTHR14208	Panther	HFB2 PROTEIN	JGI		ISS
PF02020	PFAM	eIF4-gamma/eIF5/eIF2-epsilon	JGI		ISS
UniRef100_B9RM70	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor, putative n=1 Tax=Ricinus communis RepID=B9RM70_RICCO	SoyBase	E_val: 0	ISS
UniRef100_C6TGK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TGK9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47780

Paralog	Evidence	Comments
Glyma09g38530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g242500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g47780

Limit To All Plant Sequences

>Glyma18g47780.2   sequence type=transcript   gene model=Glyma18g47780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAACCAAACCCAGTTCGGTTCTGTCCTCTTTTCGCTTCTCCCTTTTTCTCTCTGTCTCTCTCTCTCTCTCTCTCGCTCTTCTTCTCATCAAGCACAGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGACCGCCACCCATACTCTATAATAGAGTGTGAGCCTAAGCGTGAAGTCATTTTACCATCTGTAATCTACATACAAAAGATTTTGCGGCGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTTATGCGGAAATTCCTTCAGTCCTTGGAACTTTTCGAGGAAAATGAGAGGAAAAAGTTGGCAATCTTCACAGCACTTGCTTTCTCTCAGAAGCTGTCTGGTCTCCCACCAGAAACTGTGTTCCAACCACTTCTTAAAGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATGACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTAAAACGGGGAAAAGTAGAGGAGGATCTTTTGGACATTTTCCCCCCTACAAAAAGATCCATTGAAGCTTTCTCTGAGCATTTCACCAAGGAAGGATTGGTGGCCTTGGTGGAGTATAATGAAAAGAAAATTTTTGAGGTGAAACTTAAGGAAATGAAGTCTTCTTTAACAGCACAGATAACAGAGGAGGCTGATACATCTGAAGTCATTGAGACTGTGAAGCTGCGAGTTAGAGATGCTAAATTGCCGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAGGTATCCTTTAGATATTTTGCATGTATGCCAATTTATATTTGCTTGCTTCGAAATTTTTACCCTTGTTCTCATTGACCTCGTCTACTTAGGTTTCTTATTGAACAGAAAACAGATGCAAGTAAGGAATTTTGAAAATTCTTATTTTATGACCTTAGTTAAGTTCTAGGTCTTTTCTTATAGGAATTTATTTGTTGGTTATTTACCTTTGTTTTTCTTAATGTTTTGAACAGCTTGAATCTCGTGTCAACTTTCAGTGGTTTTACCTATTTCCAAAGAACTGCTGAGGAGAGCTTATGGATATTATTGTGTATTCATAAGCTAGCTGAGTACTGCTTGACTTGTTCTTAGTGGTGGATATTTTGTTCTTATATAGTGTTTAGACATTCACAATTTGACTTGTTTTAATGGTTACATAAACTTTTAGCGAATGGATTTGACATGTAACTGCATATCAAGAAAACCAGTTAGTTTTTTCTTTTTTTGTGTGAAATGTTTTATCTTTGTAATAAGTTGTTGACGACTGCACTGTGTTCATGGTGAAGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACTTGAGCTGGAGCTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTATTAGATCTCTTTATGACCAGGATGTGCTGGCTGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAGGAGGAGTAAGTGTGGTGGAGGTTCAGGGCTGAAGAAATTACCTTGTCTTTCAGCTCTTGTACCATTTAGCTAAGATATTTGGCTCGAATTCTCTTAAATTCGGTTCTGCCTAGTAGTACTGATTATCTTTTAATTTGTATTTGTGTTGTGTTTGATTCCTCCTCCTCCTCCATCGTGCTCTCGGGACATATTCATGGAGCCTGTGTGTTTTCCGCACGCCACTTTGATATGTTATACGGGTGCATTACTGTATTTTGAGTGATTATTTCAATAATGGGTGGTACTCTTATCCCTGTTGAAACTTTGAGTTCAGTGCTTGACTAATTCTATTGGTGGTACTCTTATCCTTGTTTTACACTTTTTATATCTATTTTGTTTTTATTTTCTTTATCTATTTTTCCATGTAATCAACTCTCTGTTTCCTCTTCATATAATCAACGGTTTTTTAATTTATTTTATTACTAAATCACAATGGG

Coding sequences of Glyma18g47780

Limit To All Plant Sequences

>Glyma18g47780.1   sequence type=CDS   gene model=Glyma18g47780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGACCGCCACCCATACTCTATAATAGAGTGTGAGCCTAAGCGTGAAGTCATTTTACCATCTGTAATCTACATACAAAAGATTTTGCGGCGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTTATGCGGAAATTCCTTCAGTCCTTGGAACTTTTCGAGGAAAATGAGAGGAAAAAGTTGGCAATCTTCACAGCACTTGCTTTCTCTCAGAAGCTGTCTGGTCTCCCACCAGAAACTGTGTTCCAACCACTTCTTAAAGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATGACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTAAAACGGGGAAAAGTAGAGGAGGATCTTTTGGACATTTTCCCCCCTACAAAAAGATCCATTGAAGCTTTCTCTGAGCATTTCACCAAGGAAGGATTGGTGGCCTTGGTGGAGTATAATGAAAAGAAAATTTTTGAGGTGAAACTTAAGGAAATGAAGTCTTCTTTAACAGCACAGATAACAGAGGAGGCTGATACATCTGAAGTCATTGAGACTGTGAAGCTGCGAGTTAGAGATGCTAAATTGCCGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACTTGAGCTGGAGCTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTATTAGATCTCTTTATGACCAGGATGTGCTGGCTGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAGGAGGAGTAA

>Glyma18g47780.2   sequence type=CDS   gene model=Glyma18g47780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGACCGCCACCCATACTCTATAATAGAGTGTGAGCCTAAGCGTGAAGTCATTTTACCATCTGTAATCTACATACAAAAGATTTTGCGGCGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTTATGCGGAAATTCCTTCAGTCCTTGGAACTTTTCGAGGAAAATGAGAGGAAAAAGTTGGCAATCTTCACAGCACTTGCTTTCTCTCAGAAGCTGTCTGGTCTCCCACCAGAAACTGTGTTCCAACCACTTCTTAAAGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATGACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTAAAACGGGGAAAAGTAGAGGAGGATCTTTTGGACATTTTCCCCCCTACAAAAAGATCCATTGAAGCTTTCTCTGAGCATTTCACCAAGGAAGGATTGGTGGCCTTGGTGGAGTATAATGAAAAGAAAATTTTTGAGGTGAAACTTAAGGAAATGAAGTCTTCTTTAACAGCACAGATAACAGAGGAGGCTGATACATCTGAAGTCATTGAGACTGTGAAGCTGCGAGTTAGAGATGCTAAATTGCCGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAGGTATCCTTTAGATATTTTGCATGTATGCCAATTTATATTTGCTTGCTTCGAAATTTTTACCCTTGTTCTCATTGA

Predicted protein sequences of Glyma18g47780

Limit To All Plant Sequences

>Glyma18g47780.1   sequence type=predicted peptide   gene model=Glyma18g47780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVAFTGGRTQPGTTKPDEGDRHPYSIIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMRKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFMTDFFKEYLIDNSLDDLISILKRGKVEEDLLDIFPPTKRSIEAFSEHFTKEGLVALVEYNEKKIFEVKLKEMKSSLTAQITEEADTSEVIETVKLRVRDAKLPEIEVVRILWDVLMDAVQWSGKNQQQNANAALRQVKTWAELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILHWFRKGTNSKGRQTFVKALEPFVNWLEEAEEEE*

>Glyma18g47780.2   sequence type=predicted peptide   gene model=Glyma18g47780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVAFTGGRTQPGTTKPDEGDRHPYSIIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMRKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFMTDFFKEYLIDNSLDDLISILKRGKVEEDLLDIFPPTKRSIEAFSEHFTKEGLVALVEYNEKKIFEVKLKEMKSSLTAQITEEADTSEVIETVKLRVRDAKLPEIEVVRILWDVLMDAVQWSGKNQQQNANAALRQVSFRYFACMPIYICLLRNFYPCSH*

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