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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02780 | AT | Annotation by Michelle Graham. TAIR10: isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 | chr3:602578-604648 REVERSE LENGTH=284 | SoyBase | E_val: 4.00E-156 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0008299 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009060 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aerobic respiration | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004452 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isopentenyl-diphosphate delta-isomerase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG0142 | KOG | Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase | JGI | ISS | |
| PTHR10885 | Panther | ISOPENTENYL-DIPHOSPHATE DELTA ISOMERASE | JGI | ISS | |
| PTHR10885:SF0 | Panther | ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE 1 | JGI | ISS | |
| PF00293 | PFAM | NUDIX domain | JGI | ISS | |
| UniRef100_I1N3Z3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3Z3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6EJD1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isopentenyl pyrophosphate isomerase n=1 Tax=Pueraria montana var. lobata RepID=Q6EJD1_PUEML | SoyBase | E_val: 0 | ISS |
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Glyma18g47770 not represented in the dataset |
Glyma18g47770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g38550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g242300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g47770.2 sequence type=transcript gene model=Glyma18g47770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATATAAATATGTATGTATACGTTGAAGACATGAACCGGGGGGTAAGAAATTAATAAAGTTAAAGGTTCAGGAACGAACGAAAAGGAAATCCAAAGATGGCACATTCCTCGATCGTCGTTACTCTGAGCCAGAACTTGTTTAAAAGGAACCTCACCTGTGTAAAAATTCACGCTCATTCTCCTTCTTCTTCTTTCGGATCTCGTTCTCTTTCTCTTCCTTCCTTCTCCTTCTCTCAGAGAACAACTCCTCTCTCTCTCACCGCCTCCTTCTCCTCTCACACCGCCATGGGCGAGACTTCCGCTCCCGCCGCTGATGCCGGCATGGACGCCGTCCAGCGCCGTCTCATGTTCGAAGACGAATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGTGTATTCCTGTTCAACTCTAAGTATGAGTTGCTTCTTCAGCAACGATCTGCAACCAAGGTAACATTCCCTCTTGTGTGGACAAACACCTGTTGCAGCCATCCACTGTACCGTGAATCTGAGCTTATTGATGAGAATGCCCTTGGAGTAAGAAATGCAGCTCAGAGGAAGCTTTTGGATGAGCTTGGTATTGTTGCTGAAGATGTACCAGTTGATCAGTTCACCCCATTGGGTCGCATTCTTTACAAGGCACCTTCTGATGGCAAATGGGGAGAGCATGAACGTGAGCCAATTTAATTGATTTCTAGTTTTACAGCAAGCTTATTTTGTTGTATAACCAACTAGGGTT
>Glyma18g47770.1 sequence type=CDS gene model=Glyma18g47770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACATTCCTCGATCGTCGTTACTCTGAGCCAGAACTTGTTTAAAAGGAACCTCACCTGTGTAAAAATTCACGCTCATTCTCCTTCTTCTTCTTTCGGATCTCGTTCTCTTTCTCTTCCTTCCTTCTCCTTCTCTCAGAGAACAACTCCTCTCTCTCTCACCGCCTCCTTCTCCTCTCACACCGCCATGGGCGAGACTTCCGCTCCCGCCGCTGATGCCGGCATGGACGCCGTCCAGCGCCGTCTCATGTTCGAAGACGAATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGTGTATTCCTGTTCAACTCTAAGTATGAGTTGCTTCTTCAGCAACGATCTGCAACCAAGGTAACATTCCCTCTTGTGTGGACAAACACCTGTTGCAGCCATCCACTGTACCGTGAATCTGAGCTTATTGATGAGAATGCCCTTGGAGTAAGAAATGCAGCTCAGAGGAAGCTTTTGGATGAGCTTGGTATTGTTGCTGAAGATGTACCAGTTGATCAGTTCACCCCATTGGGTCGCATTCTTTACAAGGCACCTTCTGATGGCAAATGGGGAGAGCATGAACTGGACTATCTGCTTTTCATTGTCCGGGATGTTAACGTGAACCCCAATCCTGACGAAGTGGCTGATATCAAATATGTGAACTGCGATCAGTTGAAGGAGCTGTTGAGGAAAGCTGATGCAGGTGAGGAAGGTCTGAAGCTATCGCCATGGTTCAGACTTGTTGTGGACAATTTCTTGTTCAAATGGTGGGACCATCTTGAGCGAGGAACTCTTGGGGAGGTCACTGACATGAAGACCATTCACAAGTTGACATAA >Glyma18g47770.2 sequence type=CDS gene model=Glyma18g47770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACATTCCTCGATCGTCGTTACTCTGAGCCAGAACTTGTTTAAAAGGAACCTCACCTGTGTAAAAATTCACGCTCATTCTCCTTCTTCTTCTTTCGGATCTCGTTCTCTTTCTCTTCCTTCCTTCTCCTTCTCTCAGAGAACAACTCCTCTCTCTCTCACCGCCTCCTTCTCCTCTCACACCGCCATGGGCGAGACTTCCGCTCCCGCCGCTGATGCCGGCATGGACGCCGTCCAGCGCCGTCTCATGTTCGAAGACGAATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGTGTATTCCTGTTCAACTCTAAGTATGAGTTGCTTCTTCAGCAACGATCTGCAACCAAGGTAACATTCCCTCTTGTGTGGACAAACACCTGTTGCAGCCATCCACTGTACCGTGAATCTGAGCTTATTGATGAGAATGCCCTTGGAGTAAGAAATGCAGCTCAGAGGAAGCTTTTGGATGAGCTTGGTATTGTTGCTGAAGATGTACCAGTTGATCAGTTCACCCCATTGGGTCGCATTCTTTACAAGGCACCTTCTGATGGCAAATGGGGAGAGCATGAACGTGAGCCAATTTAA
>Glyma18g47770.1 sequence type=predicted peptide gene model=Glyma18g47770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHSSIVVTLSQNLFKRNLTCVKIHAHSPSSSFGSRSLSLPSFSFSQRTTPLSLTASFSSHTAMGETSAPAADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLLDELGIVAEDVPVDQFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVNCDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLERGTLGEVTDMKTIHKLT* >Glyma18g47770.2 sequence type=predicted peptide gene model=Glyma18g47770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHSSIVVTLSQNLFKRNLTCVKIHAHSPSSSFGSRSLSLPSFSFSQRTTPLSLTASFSSHTAMGETSAPAADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENALGVRNAAQRKLLDELGIVAEDVPVDQFTPLGRILYKAPSDGKWGEHEREPI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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