Glyma18g47760 - SoyBase

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Report for Sequence Feature Glyma18g47760

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57327017
stop:	57329603
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02770	AT	Annotation by Michelle Graham. TAIR10: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase \| chr3:601017-601884 REVERSE LENGTH=166	SoyBase	E_val: 2.00E-104	ISS
GO:0051252	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of RNA metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008428	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribonuclease inhibitor activity	SoyBase	N/A	ISS
PF03737	PFAM	Demethylmenaquinone methyltransferase	JGI		ISS
UniRef100_B7FGQ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Regulator of ribonuclease-like protein n=1 Tax=Medicago truncatula RepID=B7FGQ6_MEDTR	SoyBase	E_val: 3.00E-112	ISS
UniRef100_C6T2H9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T2H9_SOYBN	SoyBase	E_val: 4.00E-115	ISS

Expression Patterns of Glyma18g47760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47760

Paralog	Evidence	Comments
Glyma09g38560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g242200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47760

Limit To All Plant Sequences

>Glyma18g47760.1   sequence type=CDS   gene model=Glyma18g47760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTTGTCACCACTGCTGAAGTGTGTGATGCGAACCCACAGTTAATTTTGAGTGGGGAGCTTCGTGCCCTTCAGCCAGTTTTTCAGATTTATGGCCGTCGACAGGTTTTCTCTGGACCTATAGTTACCTTGAAGGTGTTTGAAGACAATGTTTTGGTTCGTGAGTTCCTTGAAGAGAAAGGCAATGGAAGAGTTCTAGTTGTTGATGGAGGCGCGAGTTTACGCTGCGCTATATTGGGTGGCAACCCTGTGGTACAAGCTCAAAACAATGGATGGGCAGGTATTATTGTGAATGGATGTATAAGAGATGTGGATGAGATCAATGGTTGTGATATTGGAGTGAGAGCCCTTGCTTCCCATCCCATGAAAGCCAATAAGAAAGGCATGGGAGAGAAGCAGGTCCCCATAAATATTGCTGGGACAAGGATCAGTGATGGGGAATGGCTCTATGCAGACACTGATGGAATTCTGATCTCTCGAACAGAGCTGTCTGTTTGA

Predicted protein sequences of Glyma18g47760

Limit To All Plant Sequences

>Glyma18g47760.1   sequence type=predicted peptide   gene model=Glyma18g47760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFVTTAEVCDANPQLILSGELRALQPVFQIYGRRQVFSGPIVTLKVFEDNVLVREFLEEKGNGRVLVVDGGASLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALASHPMKANKKGMGEKQVPINIAGTRISDGEWLYADTDGILISRTELSV*

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