Glyma18g47750 - SoyBase

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Report for Sequence Feature Glyma18g47750

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57323113
stop:	57325374
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16460	AT	Annotation by Michelle Graham. TAIR10: Putative adipose-regulatory protein (Seipin) \| chr5:5377085-5378533 REVERSE LENGTH=368	SoyBase	E_val: 5.00E-107	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21212	Panther	BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG (BSCL2 PROTEIN)	JGI		ISS
PF06775	PFAM	Putative adipose-regulatory protein (Seipin)	JGI		ISS
UniRef100_G7KRI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seipin n=1 Tax=Medicago truncatula RepID=G7KRI4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E58F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E58F related cluster n=1 Tax=unknown RepID=UPI000233E58F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47750

Paralog	Evidence	Comments
Glyma09g38570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g242100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47750

Limit To All Plant Sequences

>Glyma18g47750.1   sequence type=CDS   gene model=Glyma18g47750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACAATACAGCACCTTCTTGTGTCTATCCTTCCCTTCCAAGTTCCCAACTAGTCCTCATCTCTCTGAAACTACACTCCACTCCATCTCCATGGAGGAACACAAAAAAGAAGGGTTTTTTTTGCCCACACCAGTTGCAAAACTAATATCCTTTCAAACGGATTTGATCTATAATGGCCTGGTTTCTCTCTTTTCCCCTATCCACTCTCTTTTCTCCGTGGCTTCTGAGTCCTACCACCGTGCAGAGGAGACCAAAGACAGTGTTGAATCAGCAGTGCAACGTGCTCTTTCTCATCAAATCACTCATGGCAGCGCACTCTTGCTGAAGAAACTAGGACTTTGCTTTCTGAGTGTTGCGTATGTGTGCATGGTTATGATTTTGGCTCTCATTCTGGCTGCTGTGGTGGGTGTTGCTTTGGTTCGGTTGTGGGTGGAGGAACCCGTGTCTGTCAAGGATAATCTGCATTTTGATTACACTGAAGCTCACCCTACGGCTGTGTTTTCATTCAATGGAGTTAGAAGTTTAAAGGGTCACCTTAAGAAAAAGCACATAAGTGTCCCAGTTGGCCACTCGTTTTTCGCTTCTTTGGTCCTTGTGATGCCTGAATCTGACTTCAATAGGGAGCTTGGCGTGTTTCAGTTGACTGCAGAACTCCTATCTGTGAATGGAAATGTGATAGAAAAATCTAGCCAGCCATGCATGTTGAGGTTTAGAAGCTCACCAATTCGACTAGTCCGAACCTTTATGATGGGAGTGCCTCTGGTGCTGGGAATCTCAGGGGAGACTCAGAATATTAATGTGGATATACTGAAGCACAAAGAAGACTACAGAAGAAGCAATTCTATTAGGGTAACTCTGCATCCAAGAGCAGGAACATCATCTCTTCCACAGCTATACGAAGCCAAAATTGCGATAAACTCCCATTTGCCTTGGACTAAAGAGTTGGTTCGAAATTGGAAGTGGACATTTTATGTTTGGGTGTCCTTGTATGTCTACATTGTGCTACTTGTGTCTCTCCTATGTTGTTATAGGCCACTCATCTTTCTGGTGACACCAGAGTATTTCAGTGATCATAGGGTGAGTGAACTTACAAGAGAAGAACCTGGACAATTACAAGTTGAGGAATTAGGAGATGAAAGTGAGGTTTCTGAGTTGTTGAGGAAATGGAGAAGAAGCAGAAGCAAGAGAAAAACTGTACTAGCACATGGTGGTGTGCCAGAAACCATTGTTGGTTCATCAACATCCAGCATTAGCATGATGACTACTAGAGAAGATGTAACCAGTGTGGCTGTGGAAGATGAGGTTGAGGACTCTGAATCAGCGTGCATAGGTTAG

Predicted protein sequences of Glyma18g47750

Limit To All Plant Sequences

>Glyma18g47750.1   sequence type=predicted peptide   gene model=Glyma18g47750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQYSTFLCLSFPSKFPTSPHLSETTLHSISMEEHKKEGFFLPTPVAKLISFQTDLIYNGLVSLFSPIHSLFSVASESYHRAEETKDSVESAVQRALSHQITHGSALLLKKLGLCFLSVAYVCMVMILALILAAVVGVALVRLWVEEPVSVKDNLHFDYTEAHPTAVFSFNGVRSLKGHLKKKHISVPVGHSFFASLVLVMPESDFNRELGVFQLTAELLSVNGNVIEKSSQPCMLRFRSSPIRLVRTFMMGVPLVLGISGETQNINVDILKHKEDYRRSNSIRVTLHPRAGTSSLPQLYEAKIAINSHLPWTKELVRNWKWTFYVWVSLYVYIVLLVSLLCCYRPLIFLVTPEYFSDHRVSELTREEPGQLQVEELGDESEVSELLRKWRRSRSKRKTVLAHGGVPETIVGSSTSSISMMTTREDVTSVAVEDEVEDSESACIG*

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